Spip008312.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- Lztr1
- Assembly
- GCA_905187475.1
- Location
- LR994571.1:6711185-6714748[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-13 4.9e-11 42.9 0.1 1 107 429 560 429 563 0.83 2 4 0.23 91 3.4 0.2 78 108 563 593 557 595 0.87 3 4 7.4e-19 3e-16 59.7 0.0 8 97 654 743 649 758 0.87 4 4 3.2 1.3e+03 -0.3 0.0 72 99 752 779 744 787 0.83
Sequence Information
- Coding Sequence
- ATGTTGAAAGCGATCCTTGGCAGTGAGTCCGATACCACTGACGACAGTGGTGGCGGGGCTGGCTGTAATAGTAGAAGCTACAGTGGAGGCGGTGGCGGTGGAGTGAGTGCCAGCTGCAGTGGATGCTCACTCTCTGGCGGATGTGAGAAGAAAAGCGGCAGCCGTAAGGGTCGCAAAGGGTCGTGCACACGTAAAATGTCGCATTCCAGTTCGAGCTCGATTAAAGGGCAGAAGTCCGTGTCGCCGGGTAGCTTCAGTTGCAATGCCCTCAATGTGGACTTCTCGTCGTATACGGCGACACATCAGTGGACGAAGATGTTGGATTGTGCGGAGTTTGTCGGAGCAAAACGAAGCAAGCACACAGTGGTGGCGTACAAAGATGCGATGTTTGTGTTCGGTGGCGACAATGGGAAGACAATGCTAAACGACCTAATTCGCTTCGGCGTGAAGGACAAGTCGTGGGGAAGGGCGTGCGCCACGGGCACACCACCTGCGCCAAGATACCACCACTCCGCAGTGGTCTACGGGACGTCGATGTTTATCTTTGGCGGATACACAGGCGATATTCATTCGAACTCGAATTTAACGAACAAAAACGATTTGTTCCAGTACAAGTTTCAGACTGCCATGTGGGTGGAATGGAAGTTCTCTGGCAGGATGCCTGTTCCACGATCGGCTCATGGAGCAGCTGTTTACGATCACAAGATGTGGATATACGCCGGGTACGATGGGAACGCCCGGCTAAATGACATGTGGACGCTGAACCTGACGGGCGAAAACCATCAATGGGAGGAGGTCGAACAGATCGGTGACAGGCCGCCGACGTGCTGTAACTTCCCCGTTGCCGTGGCGAGAGATTGTATGTACGTCTTTTCGGGACAGAGCGGCTTGCAGATCACTAACTCCCTGTTTGAGTTCCACTTTAAAACGAAAACTTGGCGACGAATATCCAACGAACACGTTCTCCGCGGCGCATCGGCCCCTCCCTCTCGCCGCTATGGCCACACGATGGTTCACCACGACAGATTTCTGTACGTGTTCGGCGGCTCCGCCGACTCGACCTTACCCAATGACCTACACTGCTACGATTTAGATTCCCAAGTGTGGTTTGTCATTGCGCCGGAGCCGAACTCTGATGTCCCCTCAGGGCGTGTATTCCACGCATCGGCCGTCATCGCGGACGCCATGTACATCTTCGGAGGCACCGTCGACAACAGCGTGCGTCGCGGCGATACCTACCGTTTTCAGTTCTCCAGCTATCCGAAATGTACTCTGCGCGATGACTTCGGAAAGTTCTTCCACGAGAAGCAATTCTGCGACATTCAGTTTGTTGTTGGACCGGAGGCGATTAAGATTCAGGCGCATATAGCTTTTGTCGCTGCGCGATCAAAGTTTTTACGAACGAAAATTCTGGCCGCTCGTGGTGACAGTTACGCGAATCTACAGAAGTTGATCGGAACAGCTGAGGTGCCCTTCAACGATCGACCGCTGTTGGAGGTTCGGTTGGTGAATGCTCCCCCAGAGGCCTTTGAAATAATCCTTAATTATATTTATACGGATCGAATTGATCTAAAGGATTCGTACAGTAAGAATATCGTAATTTTAATAACAGACATTTATCAGCTGGCCGGGCAGTTCCTGATGCCGCGACTGGCTCAAGGTTGTATCCAATACCTGGACTTTAAAACATCGAAGCAGAATGTGCTGGAGGCACTCTACAACGCGGATAGACAGAAAATCCAGATCATCAAGGATCATTGCATGCAGTTCATTGTAAAGGACGAGAACTTCTCAGACGTTGTAATGTCGACTGAGTTTAGTGACTTGGACAAACCACTTTTGGTGGAAATAATCAGGAAGCGATTGAACCCGAGTAAGACGAATCCGGATACGAATTTGGAGAAGAATGTTGGAACCACTCTTGAGAGTGACATGGCCGGTTTTTTGGAGTCATGCGGAAAGGATTTTTGTGATATCAACCTCATCCTGGATGGTCAGGTGATACCGGCGCACAAATCGATTCTCTCAGCGCGTTGCTCTTACTTCCAGGGAATGTTTCGGTCTTTTATGCCCCCAGACAACACAGTAAACATCCAAATTGGTGACGTCTCCCCCTCCCTGGAATCCTTCAATTCACTTCTTCGTTACATTTATTATGGCGAAACAAAACTGCCCCCGCAAGATGCCCTGTTTTTATTTCAGGCCCCATCATTTTACGGTCTCTCCAATAATAGATTGCATGCATTTTGCAAGTACTCAGTCCAGCATAACATCACCTACGAGAACGTTCTGCAGACTCTGGAAGCAGCAGACTTTACGAAAATTGTCGACATCAAGGAGTATGCCTTAAAGCTGATCGTTCGCGAATTCACCACTGTCGCTCGTTTGCCCAAGATGACTGGTCTGAGTCGAGATTTGCTCCTGGAGATCATCCGGGCGGTAGCGGATGGATACGGGAAGACTCCACCACCGATCAGCATCAATGCGGATATTTGA
- Protein Sequence
- MLKAILGSESDTTDDSGGGAGCNSRSYSGGGGGGVSASCSGCSLSGGCEKKSGSRKGRKGSCTRKMSHSSSSSIKGQKSVSPGSFSCNALNVDFSSYTATHQWTKMLDCAEFVGAKRSKHTVVAYKDAMFVFGGDNGKTMLNDLIRFGVKDKSWGRACATGTPPAPRYHHSAVVYGTSMFIFGGYTGDIHSNSNLTNKNDLFQYKFQTAMWVEWKFSGRMPVPRSAHGAAVYDHKMWIYAGYDGNARLNDMWTLNLTGENHQWEEVEQIGDRPPTCCNFPVAVARDCMYVFSGQSGLQITNSLFEFHFKTKTWRRISNEHVLRGASAPPSRRYGHTMVHHDRFLYVFGGSADSTLPNDLHCYDLDSQVWFVIAPEPNSDVPSGRVFHASAVIADAMYIFGGTVDNSVRRGDTYRFQFSSYPKCTLRDDFGKFFHEKQFCDIQFVVGPEAIKIQAHIAFVAARSKFLRTKILAARGDSYANLQKLIGTAEVPFNDRPLLEVRLVNAPPEAFEIILNYIYTDRIDLKDSYSKNIVILITDIYQLAGQFLMPRLAQGCIQYLDFKTSKQNVLEALYNADRQKIQIIKDHCMQFIVKDENFSDVVMSTEFSDLDKPLLVEIIRKRLNPSKTNPDTNLEKNVGTTLESDMAGFLESCGKDFCDINLILDGQVIPAHKSILSARCSYFQGMFRSFMPPDNTVNIQIGDVSPSLESFNSLLRYIYYGETKLPPQDALFLFQAPSFYGLSNNRLHAFCKYSVQHNITYENVLQTLEAADFTKIVDIKEYALKLIVREFTTVARLPKMTGLSRDLLLEIIRAVADGYGKTPPPISINADI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01055302;
- 90% Identity
- -
- 80% Identity
- -