Sumb001710.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus umbraculus
Gene Symbol
ECU06_1150
Assembly
GCA_900474325.1
Location
UCOK01017686.1:55666-61355[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00029 0.033 15.2 0.2 2 23 260 281 259 281 0.97
2 16 7.4e-06 0.00085 20.2 0.7 1 23 287 309 287 309 0.99
3 16 1.7e-06 0.00019 22.2 1.1 1 23 315 338 315 338 0.95
4 16 0.016 1.8 9.7 0.4 1 23 344 366 344 366 0.98
5 16 0.0015 0.17 12.9 2.6 1 23 372 394 372 394 0.94
6 16 0.00028 0.032 15.2 3.0 1 23 400 422 400 422 0.97
7 16 3.5e-05 0.0041 18.0 2.3 1 21 428 448 428 449 0.94
8 16 0.00033 0.038 15.0 0.7 1 20 497 516 497 518 0.95
9 16 0.01 1.2 10.3 0.4 1 23 551 574 551 574 0.95
10 16 0.0019 0.22 12.6 2.6 1 23 604 626 604 626 0.98
11 16 1.1e-05 0.0013 19.6 1.6 1 23 632 655 632 655 0.97
12 16 9.3e-07 0.00011 23.0 0.4 1 23 661 683 661 683 0.98
13 16 1.1e-07 1.3e-05 25.9 0.6 1 23 689 711 689 711 0.99
14 16 3.7e-05 0.0043 18.0 1.5 1 23 717 739 717 739 0.98
15 16 0.0007 0.08 14.0 4.2 1 23 745 767 745 767 0.96
16 16 8e-06 0.00092 20.1 1.0 2 23 774 796 773 796 0.96

Sequence Information

Coding Sequence
ATGCGGGACTCAATGATTCTTTCTTCATGCGATGATGAAAATGAAGTAGTTGGGAAGGCTAAGACTACGGACGTCGAAGAAGGAGAATATTTTCTAGTGTCCGATATTCCTGACAATGCGGAGGGAGAAGAGATGCAGGTCATCAATGAGGAAGAAGAAAATCCATCGATACCTGAAATGTGCAGGATATGTGCGACTGTCAACAGCCATACtattccaatttttaaaggaGAAGGACTCGAAAATGATCTATGTAGCAAGATAAATAAGCATCTACCTATAAAAGTGACTGAAAAAGACATTTTACCTCTTAAGCTATGTTATCACTGTGCCGCGACTTTGATCGCCTGGAATGATCTTTCCGAAGGTTGTTTAGAAGCTCAAAATCAACTTTTACGACTCCAGGCAGAACGAGTGCAATCAGCAGACGAAGAAGCGAGACCTGAGCAGCTTGAAgtaactgaaaattttaaagaagaatatgtggAGGAGAACCGACAGAAAGACTTGATTGATCTCAAAAATGCTGAAGGCTCAGATTCTGAAAGGTCCAGTAGAGTCCAGACATCATTTAAAGTATTCCTTGACACGCAAAATATATTTCGGAGGCCTTTGAAATCGACAATCACGGATAAAATATCGGATCTGCAAATCCCAATTGATGAAGAGCAACCAGAAGATGTGAAAGATGACGTAAAACCGGAACAAGGGGAAGATTATCAGGATTTTCAACTCGATTCTGAAGTCGCCAACAGCGACGGCGAGGAATTTCACTGGAAATGTAAAGTTTGCAACGAGGAATTCAATTCTGCGATTGAATTAAATGATCACGCAAAACGACACGACGCCAAAGAGTCTTATAGATGTCGAGAATGCGGAAGAGCCTTTAAACTCAAAGATTCGTACATCCGTCATGCTCGAATTCACAAAGACGAACGTCCATTTACTTGCCACGTTTGTGGGAAACAATTCCGAGATTCTGGAGGACTTTCTCGTCACTTGAAGGACGTTCAtgctaaagtaaaaaattttccttgcGATCTTTGTGAAAGTAGTTTTGCTTCGAAAGCAACGAGAGATGATCATCGAAGGACTCACACTGGTGAAAGACCCTACATATGTGATTGTTGTGGAAAAACATTCAAATCTAAAGCTTCCCTTTATATACATAGCAAACTTCATACAGATGAGTTTCCTCATCCATGTTCATATTGCACCAAGAAATTTCGACGAAGACAGGAAATGCTGGCTCACGTGACAACTCATACTGGCGAGAAAAACTTTGCTTGTGATATTTGTCACAAACGTTTCAGGGTGAAGTCAGAACTCATGAGACACAGGTGCGGCGCTCCGAGGTCATCATTCGCGACTTACTGTTCCATTAAGACAAAGAAAAACCAGAGAAGATTAGAATCGCCAAAAGCCAAGGAGTCTCTAAAAACTGAAGAAGTATTTAATCAGAATTCAACTCCTTCAAAAGTCTTGCAATATTCCTGCGAACACTGTGGGTCGACTTTCGAGAGGAAATCCCCTTTGAAGTATCATCTGATCAACTGTTCTTCAAACACCGAACTCTTCAAAATTGAGGAAAAGCAACGTGAAACAGAAAATGACAATTCCAATCGCCAAAAAAGGACGCGGCAAAAATCGTATCCTTGTATGCACTGCGATTACGAAGCCAAGAGAAAAAAGACTTTGGATGTTCATATATTGGAAGCTCATCCAGAATTAATAGcttcgaaaaataaaagaagcatCGACAAACAAGCAGTTGATCAAGCGAAAATGGAAGTTAACGGTAAAATTTACTACCACTGTACAGAGTGTGGTAAAAATCTCTTCTCACCCTACACTTTTTCCTGGCATAAACGAATTCACACTGGGGAAAGACCCTTTACGTGTCATCTTTGTGGGAAGCAATTCCGAGTGAATCAAGGCTTAGCTCGTCACTTAAGAGAGACTCACGCCGgaattaagaaatttcctTGCGATATTTGCGGCCGAATGTTCACCACGAAACGGAACGTTGAAGATCACAGAAGAATTCACACTGGCGAGAGACCCTACGTCTGTAATATTTGCGGAAAAGCCTTCAAACAAAAGGCGTCACTATTTGTTCATAATCGCACTCACTCGGATTTGTTTCCTTTCAAGTGTTCCTACTGTAATCAAGGATTTCGAACGAAAACCCCATTGATGGTTCACATAACAAAACACACTGGCGAAAAACCACACGCTTGTGACATCTGCAATCGACATTTTAGAATCAAGTTTGAGTTAAAAAGACACCGGCTTGTTCACTTTGATGAGAAACCCTGGCAGTGCAATGACTGCGATCTGTCTTTTCGACAGAAGAGATACCTTGTTAATCACAGAAAAGTTAATCACGAGACGATTGCGAgagagtaa
Protein Sequence
MRDSMILSSCDDENEVVGKAKTTDVEEGEYFLVSDIPDNAEGEEMQVINEEEENPSIPEMCRICATVNSHTIPIFKGEGLENDLCSKINKHLPIKVTEKDILPLKLCYHCAATLIAWNDLSEGCLEAQNQLLRLQAERVQSADEEARPEQLEVTENFKEEYVEENRQKDLIDLKNAEGSDSERSSRVQTSFKVFLDTQNIFRRPLKSTITDKISDLQIPIDEEQPEDVKDDVKPEQGEDYQDFQLDSEVANSDGEEFHWKCKVCNEEFNSAIELNDHAKRHDAKESYRCRECGRAFKLKDSYIRHARIHKDERPFTCHVCGKQFRDSGGLSRHLKDVHAKVKNFPCDLCESSFASKATRDDHRRTHTGERPYICDCCGKTFKSKASLYIHSKLHTDEFPHPCSYCTKKFRRRQEMLAHVTTHTGEKNFACDICHKRFRVKSELMRHRCGAPRSSFATYCSIKTKKNQRRLESPKAKESLKTEEVFNQNSTPSKVLQYSCEHCGSTFERKSPLKYHLINCSSNTELFKIEEKQRETENDNSNRQKRTRQKSYPCMHCDYEAKRKKTLDVHILEAHPELIASKNKRSIDKQAVDQAKMEVNGKIYYHCTECGKNLFSPYTFSWHKRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFTTKRNVEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHSDLFPFKCSYCNQGFRTKTPLMVHITKHTGEKPHACDICNRHFRIKFELKRHRLVHFDEKPWQCNDCDLSFRQKRYLVNHRKVNHETIARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01391393; iTF_01392199;
90% Identity
iTF_01392199;
80% Identity
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