Sjap022886.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus japonicus
Gene Symbol
ECU06_1150
Assembly
GCA_900474275.1
Location
UCOH01007016.1:20210-26108[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0003 0.031 15.1 0.2 2 23 271 292 270 292 0.97
2 16 7.7e-06 0.00079 20.2 0.7 1 23 298 320 298 320 0.99
3 16 1.7e-06 0.00018 22.2 1.1 1 23 326 349 326 349 0.95
4 16 0.016 1.7 9.7 0.4 1 23 355 377 355 377 0.98
5 16 0.0015 0.16 12.9 2.6 1 23 383 405 383 405 0.94
6 16 0.00029 0.03 15.2 3.0 1 23 411 433 411 433 0.97
7 16 3.7e-05 0.0038 18.0 2.3 1 21 439 459 439 460 0.94
8 16 0.00034 0.035 15.0 0.7 1 20 508 527 508 529 0.95
9 16 0.0046 0.47 11.4 0.5 1 23 562 585 562 585 0.95
10 16 0.002 0.2 12.6 2.6 1 23 615 637 615 637 0.98
11 16 1.1e-05 0.0012 19.6 1.6 1 23 643 666 643 666 0.97
12 16 9.6e-07 9.9e-05 23.0 0.4 1 23 672 694 672 694 0.98
13 16 1.1e-07 1.2e-05 25.9 0.6 1 23 700 722 700 722 0.99
14 16 3.9e-05 0.004 17.9 1.5 1 23 728 750 728 750 0.98
15 16 0.00072 0.075 13.9 4.2 1 23 756 778 756 778 0.96
16 16 1.1e-05 0.0011 19.7 1.1 2 23 785 807 784 807 0.96

Sequence Information

Coding Sequence
ATGCGGGACTCAATGATTCTTTCTTCGTGCGATGATGAAGATGAAGTAGTTGGGAAGGCTAAGACTACGGGCGTCGAAGAAGGAGAATATTTTCTAGTGTCCGATATTCCTGACAATACGGAGGGAGAAGAGATGCAAGTCATCAACGAGGAAGAAGAAAATCCATCGATACCTGAAATGTGCAGGATATGTGCGACTGTCAACAGCCATActattccaatttttaaaggagAAGGACTCGAGAATGATCTATGTAGCAAGATAAATAAGCATCTACCtataaaaGTGACTGAAAAAGACATTTTACCTCTTAAGTTATGTTATCATTGTGCCGCGACCTTAATCGCCTGGAATGATCTTTCCGAAGGTTGTTTAGAAGCTCAAAATCAACTTTTACGACTCCAGGCAGAAAGAGTGGTTGGTattaatataactttatttaattttaggCAATCAGCAGACGAAGAAGCAAGACCTGAGCAGCTTGAAgtaactgaaaatttcaaagaagaatatgtggAGGAGAACCGACAAAAAGACTTGAGTGATCTCAAAAATGCTGAAGGCTCAGATTCTGAAAGGTCCAGTAGTGTCCAGACATCATTTAAAGTATTCCTTGACACGCAAAATATATTTCGGAGGCCTTTGAAATCGACAATCACGGATAAAATATCGGATCTGCAAATCCCAATTGATGAAGAGCAACCAGAAGATGTGAAAGATGACGTAAAACCGGAACAAGGGGAAGATTATCAGGATTTTCAACTCGATTCTGAAGTCGCCAACAGCGACAGTGAGGAATTTCACTGGAAATGTAAAGTTTGCAACGAGGAATTCAATTCTGCGATTGAATTAAATGATCACGCAAAACGACACGACTCCAAAGAGTCTTATAGATGTCGAGAATGCGGAAGAGCCTTTAAACTCAAAGATTCGTACATCCGCCATGCTCGAATTCACAAAGACGAACGTCCATTTACTTGCCACGTTTGTGGGAAACAATTCCGAGATTCTGGAGGACTTTCTCGTCACTTGAAGGACGTTCAtgctaaagtaaaaaattttccttgcGATCTTTGTGAAAGTAGCTTCGCTTCGAAAGCAACGAGAGATGATCATCGAAGAACTCACACTGGTGAAAGACCCTACATATGTGATTGTTGtggaaaaacattcaaatctAAGGCTTCCCTTTATATTCATAGCAAACTTCATACAGATGAGTTTCCTCATCCATGTTCATATTGCACCAAGAAATTTCGACGAAGACAGGAAATGCTAGCTCACGTGACAACTCATACTGGCGAGAAAAACTTTGCTTGTGATATTTGTCACAAACGTTTCAGGGTGAAGTCAGAACTCATGAGACACAGGTGCGGCGCTCCGAGGACATCATTCGCGACTTACTGTTCCATTAAGACAAAGAAAAACCAGAGAAGATTAGAATCGCCAAAAGCCAAGGGGTCtctaaaaactgaaaaagtatttaatcaGGATTCAACTCCTCCAAAAGTCTTCCAATATTCCTGCGAACATTGTGGGTCGACTTTCGAGAGGAAATCCCCTTTGAAGTATCATCTGATCAACTGTTCTTCAAACACCGAACTCTTCAAAATTGAGGAAAAGCAACGTGAAACAGAAAATGACAATTCCAATCGCCAAAAAAGGACGCGGCAAAAATCGTATCCTTGTATGCACTGCGATTACGAAgccaagagaaaaaaaaatttggatctTCATATATTGGAAGCTCATCCAGAGTTAATAGcttcgaaaaataaaagaagcaTCGACAAACAAGCAGTTGACCAAGCGAAAATGGAAGTTAACGGTAAAATTTACTACCACTGTACAGAGTGTGGCAAAAATCTCTTCTCACCCTACACTTTTTCCTGGCATAAACGAATTCACACTGGGGAAAGACCCTTCACGTGTCATCTTTGTGGGAAGCAATTCCGAGTGAATCAAGGCTTAGCTCGTCACTTACGAGAGACTCACGCCggaattaagaaatttcctTGCGATATTTGCGGCCGAATGTTCACCACAAAACGGAACGTTGAAGATCACAGAAGAATTCATACTGGCGAGAGACCCTACGTCTGTAATATTTGCGGAAAAGCCTTCAAACAAAAAGCGTCACTATTTGTTCATAATCGCACTCACTCAGATTTGTTTCCTTTCAAATGTTCCTACTGTAATCAAGGATTTCGAACGAAAACCCCATTGATGGTTCACATAACAAAACACACTGGCGAAAAACCACATGCTTGTGACATCTGCAATCGACATTTTAGAATCAAGTTTGAGTTAAAAAGACACCGGCTTGTTCACTTTGATGAGAAACCCTGGCAGTGCACTGACTGCGATCTGTCTTTTCGACAGAAGAGATACCTTGTTAATCACAGAAAAGTTAATCACGAGACGACGCGAgagagtaatttttaa
Protein Sequence
MRDSMILSSCDDEDEVVGKAKTTGVEEGEYFLVSDIPDNTEGEEMQVINEEEENPSIPEMCRICATVNSHTIPIFKGEGLENDLCSKINKHLPIKVTEKDILPLKLCYHCAATLIAWNDLSEGCLEAQNQLLRLQAERVVGINITLFNFRQSADEEARPEQLEVTENFKEEYVEENRQKDLSDLKNAEGSDSERSSSVQTSFKVFLDTQNIFRRPLKSTITDKISDLQIPIDEEQPEDVKDDVKPEQGEDYQDFQLDSEVANSDSEEFHWKCKVCNEEFNSAIELNDHAKRHDSKESYRCRECGRAFKLKDSYIRHARIHKDERPFTCHVCGKQFRDSGGLSRHLKDVHAKVKNFPCDLCESSFASKATRDDHRRTHTGERPYICDCCGKTFKSKASLYIHSKLHTDEFPHPCSYCTKKFRRRQEMLAHVTTHTGEKNFACDICHKRFRVKSELMRHRCGAPRTSFATYCSIKTKKNQRRLESPKAKGSLKTEKVFNQDSTPPKVFQYSCEHCGSTFERKSPLKYHLINCSSNTELFKIEEKQRETENDNSNRQKRTRQKSYPCMHCDYEAKRKKNLDLHILEAHPELIASKNKRSIDKQAVDQAKMEVNGKIYYHCTECGKNLFSPYTFSWHKRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFTTKRNVEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHSDLFPFKCSYCNQGFRTKTPLMVHITKHTGEKPHACDICNRHFRIKFELKRHRLVHFDEKPWQCTDCDLSFRQKRYLVNHRKVNHETTRESNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01394553;
90% Identity
iTF_01391393; iTF_01394553;
80% Identity
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