Sito027999.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus itoensis
Gene Symbol
ECU06_1150
Assembly
GCA_904066005.1
Location
CAJFCP010026032.1:84223-88772[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00029 0.04 15.2 0.2 2 23 265 286 264 286 0.97
2 16 1.9e-05 0.0026 18.9 0.5 1 23 292 314 292 314 0.98
3 16 1.7e-06 0.00023 22.2 1.1 1 23 320 343 320 343 0.95
4 16 0.017 2.4 9.6 0.7 1 23 349 371 349 371 0.98
5 16 0.0015 0.2 12.9 2.6 1 23 377 399 377 399 0.94
6 16 0.00027 0.037 15.3 2.9 1 23 405 427 405 427 0.97
7 16 3.6e-05 0.0049 18.0 2.3 1 21 433 453 433 454 0.94
8 16 7.1e-05 0.0096 17.1 0.9 1 20 502 521 502 523 0.95
9 16 0.59 81 4.8 0.4 1 23 556 579 556 579 0.91
10 16 0.00083 0.11 13.7 2.4 1 23 609 631 609 631 0.98
11 16 1.1e-05 0.0015 19.6 1.6 1 23 637 660 637 660 0.97
12 16 9.4e-07 0.00013 23.0 0.4 1 23 666 688 666 688 0.98
13 16 1.1e-07 1.5e-05 25.9 0.6 1 23 694 716 694 716 0.99
14 16 3.9e-05 0.0053 17.9 1.7 1 23 722 744 722 744 0.98
15 16 0.0001 0.014 16.6 2.4 1 23 750 772 750 772 0.97
16 16 1.1e-05 0.0014 19.7 1.1 2 23 779 801 778 801 0.96

Sequence Information

Coding Sequence
ATGGAAATGCGGGATTCAATGATTCTTTCTTCGTGCGATGATCGCGATGATGAAGATGAAGTAGTCGGGAAGGCTAAGACTATGGACGTTGAAGAAGGAGAATATTTTCTAGTGTCCGATATTCCTGACAATACGGAGGAAGAAGAGATGCAAGTCATCAACGAGGAAGAAGAAAATCCATCCATACCTGAAATGTGCAGGATATGTGCGACTGTCAACAGCCATACTATTCCAATTTTTAAAGGAGAAGGACTCGAGCATGATTTATGTAGCAAGATAAATAAGCATCTACCTATAAAAGTGACTGAAAAAGACATTTTACCTCTTAAACTATGTTATCACTGTGCCGCGACTTTGCTCGCCTGGAATGATCTTTCCGAAGGTTGTTTAGAAGCTCAAAATCAACTTTTACGACTCCAGGCAGAACGAGTGCCATCTGCAGACGAAGAAGCGAGACTTGAGCAGCTTGAAGTAACTGAAAATTTCAAAGAAGAATATGTGGAGGAGAACCGACAGAAAGACTTGATTGATCACAAAAATGCTGAAGGCCCAGATTCTGAAAGGTCCAGTAGAGTCCAGACATCATTTAAAGTATTCCTTGATACGCAAAATATATTTCGGAAGCCTTTGAAATCGACAATCACGGTTAAAATATCGGATCTGCAAATCCCAATTGATGAAGAGCAACCAGAAGATATGAAAGATGACGTAAAACCGGAACAAGGGGAAGAATATCAGGAATTTCAACTCGATTCAGAAGTCGCCAACAGCGACAGTGAGGAATTACACTGGAAATGTAAAGTTTGCAACGAGGAATTCAATTCTGCAATTGAATTAAATGATCACGCAAAACGACACAACTCCAAAGAGTCTTATAGATGTCTAGAATGTGGAAGAGGCTTTAAACTCAAAGATTCGTACATCCGCCATGCTCGAATTCACAAAGACGAACGTCCTTTCACTTGCCACGTTTGTGGGAAACAATTCCGAGATTCTGGAGGACTTTCTCGTCATTTGAAGGACGTTCATGCCAAAGTAAAAAATTTTTCTTGTGATCTTTGTGAAAGCAGTTTTGCTTCGAAAGCAACTAGAGATGATCATCGAAGAACTCACACTGGTGAAAGACCCTACATTTGTGATTGTTGTGGAAAAACATTCAAGTCTAAGGCTTCTCTTTATATTCATAGCAAACTTCATACAGATGAGTTTCCTCATCCTTGTTCTTATTGCTCCAAGAAATTTCGACGAAGACAGGAAATGCTGGCTCACGTGACAACTCACACTGGCGAGAAAAACTTTGCTTGTGATATTTGTCACAAACGTTTCAGGGTGAAGTCAGAACTTATGAGACATCGGTGCGGCGCCTCGAGGACATCATTCGCGACTTACTGTTCCATTAAGACAAAGAAAACCCAGAGAATATTAAAATCGCCAAAATCCAAGGAGTCTCTAAAAACTGAAGAAGTATTTAATCAGGATTCAACTCCTTCAAAAGTCTTCCAATATTCCTGTGAACACTGTGGGTCGACTTTCGAGAGGAAATCCCTTTTGAAGTATCATCTGATCAACTGTTCTTCAAACACCGAACTCTTCAAAATTGAGGAAAAGCAACGTGAGAAAGAAAATTACACTTCCAATTGCCACAAAAGGACGCGTCAAAAGTCGTATCCTTGTATGCACTGCGATTACGAAGCCAAGAGAAAAAAGATTTTGGATCTTCATATGTTGGAAGCTCATCCAGAGTTGATACCTTCGAAAAATAAAAGAAGCATCGACAAACAAGCAGTTGATCAAGCGAAAATGGAAGTTAACGGTAAAATTTACTACCACTGTACAGAGTGTGGTAAAAATCTCTACTCTCCCTACACTTTTTCCTGGCATAAACGAATCCACACTGGGGAAAGACCCTTCACATGTCATCTTTGTGGGAAGCAGTTCCGAGTGAATCAAGGCTTAGCTCGCCACTTGCGAGAAACTCACGCCGGAATTAAAAAATTTCCTTGCGATATTTGCGGCCGAATGTTCACCACGAAACGGAATGTTGAAGATCACAGAAGAATTCACACTGGCGAGAGACCTTACGTCTGTAATATTTGTGGAAAAGCCTTCAAACAAAAGGCGTCACTATTTGTTCATAATCGCACTCACTCGGATTTGTTTCCTTTTAAGTGTTCCTACTGTAACCAAGAATTTCGAACGAAAACCCCGTTGATGGTTCACATAACAAAACACACTGGCGAAAAACCATATGCTTGTGACATCTGCAATCGCCATTTTAGAATCAAGTTTGAGTTGAAAAGACACCGGCTTGTTCATTTTGATGAGAAACCCTGGCAGTGCACTGACTGCGATCTTTCTTTTCGGCAGAAGAGGTACCTTGTTAATCACAGGAAAGTTAATCACGAGACGATTGCGAGAGAGTAA
Protein Sequence
MEMRDSMILSSCDDRDDEDEVVGKAKTMDVEEGEYFLVSDIPDNTEEEEMQVINEEEENPSIPEMCRICATVNSHTIPIFKGEGLEHDLCSKINKHLPIKVTEKDILPLKLCYHCAATLLAWNDLSEGCLEAQNQLLRLQAERVPSADEEARLEQLEVTENFKEEYVEENRQKDLIDHKNAEGPDSERSSRVQTSFKVFLDTQNIFRKPLKSTITVKISDLQIPIDEEQPEDMKDDVKPEQGEEYQEFQLDSEVANSDSEELHWKCKVCNEEFNSAIELNDHAKRHNSKESYRCLECGRGFKLKDSYIRHARIHKDERPFTCHVCGKQFRDSGGLSRHLKDVHAKVKNFSCDLCESSFASKATRDDHRRTHTGERPYICDCCGKTFKSKASLYIHSKLHTDEFPHPCSYCSKKFRRRQEMLAHVTTHTGEKNFACDICHKRFRVKSELMRHRCGASRTSFATYCSIKTKKTQRILKSPKSKESLKTEEVFNQDSTPSKVFQYSCEHCGSTFERKSLLKYHLINCSSNTELFKIEEKQREKENYTSNCHKRTRQKSYPCMHCDYEAKRKKILDLHMLEAHPELIPSKNKRSIDKQAVDQAKMEVNGKIYYHCTECGKNLYSPYTFSWHKRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFTTKRNVEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHSDLFPFKCSYCNQEFRTKTPLMVHITKHTGEKPYACDICNRHFRIKFELKRHRLVHFDEKPWQCTDCDLSFRQKRYLVNHRKVNHETIARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01394553;
90% Identity
iTF_01392199;
80% Identity
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