Sumb013295.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- egg
- Assembly
- GCA_900474325.1
- Location
- UCOK01020134.1:95746-101371[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.76 5e+03 -2.3 0.0 46 74 603 629 599 632 0.80 2 2 9.6e-14 6.4e-10 39.1 0.0 5 71 633 693 629 698 0.88
Sequence Information
- Coding Sequence
- ATGACATTGGAAAACGCAGAAATCATAGAGTTGATTTCTGACGATGAATCGGAGGAAGAAAAGacaaaagataagaaaaagaaaacgtgCAATGCGAATtgcattaattttcaatgcaGTTCTGGACTGAATATAAAAACAGCTCCCAGTTTTGCTTGTAGATATTATGGCGTGaatatgtcaaaaaaaaagaagcgaATAATTTGCGAAGAGTGTCTTAATATTGCTATTCAACATCAGcagACACTTGTAAATTCACTCCTCGATCACAAGTCCTTGCTAAGTTGCGATTTTCCTGACCATACAATGGAGGTAGAGATTTCTGACAGCGATGATTCTGAtagtgaaaagaaaaatgacgGCGAAGACTCTTACTTGCCGGAGGAATTTCTCTTGGATTTAGAAGAAAAACTGGAAACATCCTTAGCCAAAGTTAAAGTCAAGTATGACGTCGACTTTCAAGTATCAGAAGCTCATAAAACCCTTCATAATCAATGGGAGAAAATTCATATTGAGAATAATGAACTTGAtgaacaaataaaaaacatgATGGGCAATTTGGATAAGTTACGGAACTCGCTTTACAATGAATTCAAACCAAGTATAAAAATGTTGGAGGAACTTACGATATGTGATGGAGTGCAAGATAACCATCAATATCCACTAGTTGCCACGAAAAAGGTCACTCAAGTTCGACCTTCAACTTCAATGTTTGTTCAAGATAATCAGCCTATTATTCtcgaagaaatagaaagggatagtgTAAAGGCTGTTGTAGATTTGCCTCCACCAGGTCCACTTATAAAAACCCTCCCCGAAATCGACACAATCGTCTTAATTATGAAACACGCTCTTATTCCTTGGTTGAAAGGCAAGATCGTTACTGTCGTTAGCCGGAGTCCTTCTCAGTATAAAGTGAAACTACTCGCAAAGAAGAATAATCAAGCACTTAAGCTAATTACGGGAAAACAACTAGCTATTGCCGTTCCAAGTTCTGTGATTATTCCAGTTGCAACTCGAGTCGTTGCTCTTTTTCACGATGTAACTTGCAGCAATTTTTACAGTGGTGTTATTGCTGAGCCTCCAAAGTCTACAAATAAATAtagGTATCTGGTATTTTTTGACGACGGATATGCGCAGTATGTAATTCACAAGAACATCTACCTCGTCTCCGAGAGTTCTCCCCAAGTTTGGGAAGATGTACCAAGCCCCTCTCGAGATTTTGTTAAGAAATATATGGAGTCTTATCCGGAAAGGCCGATGGTAAAGTTACAACAAGGACAAGTAGTAAAAACAGAATGGAACGGAAAGTGGTGGATAGCACGAGTTGTCCAGGTCGACGCCAGCTTGGTTCAAATGCATTTCGACGCAGATAATCGAACCGAGTGGATTTACAGAGGATCTGCGAGATTAGGCCCACTCTATGTCGAATTGCTAAAAGCAAATGCAAGACAACAAGGAAGTCATGTCGGTCACAATGCTCCATCTCGTCATCGACTCCCAGCTTCTACTAACAAGACCAACTTGCCCTACGTAGAATACACTAATTCCATTGAGCAAGAGGAACTCCTCAATCGCAAAGTGGAACAGAAGCCAACACCCGTCATCACTTCCAACAATCTTCGTATAAGTGATAAAGTTGTGACCGAAGTTCCCACTGTTCCTACTCAACAATCACGCGCTGTTGCTAAGAAGAGTACCACAAAAAAGCCAATCCTTCCGGAGCCTACTTATAATACCAGCGCTGAGACGAAACCTTCGCATAGTATTGTTGTAAGTCAAGACATTTATTACCAGACTCAAAACAGGAAAAATCCAAAGAAATATATACCTCACAGGTGTAGTCCAAAGTGCCTCGAAAGTTGTTCCTTTACTCCGGATGATTTGAAGGGATATTCTCCACTTTCGATTCCACTGCTTTGTGGATGGAACAGACAGCTTTGTAAATTctcaaaaggaaaaaaggtGACTTTATATCATGCACCGTGTGGAGTTAGGCTTCGAAATATGGAAGAGCTTCATCAGTATTTAAGACTTACTAAGAGTCCGATGTCGGTTGATTTATTCGAGTTTGATCACTGGGTTCACTGTCTTGCAGAGTTTGTTCTTGATAAGTGCTTCGTTAATATCAAGGATTTGAGTTACGGAGCAGAAAACGTTCCTATTCCATGTGTTAATGAAATTGATCACGCTCTTCCTGATACGATTAGGTATAGCACTCAAAGAGAACCGACAGAAGGTGTTCATCTGAATTTAGATCCAGAATTTTTGTGTTGCTGTGACTGCACGGACGATTGTCAggATAAAGATAAGTGTCAGTGCTGGCAGTTGACAATTCAGGGTGCAACTTTAGGTGGTCGAGTTCCAAACACTGCTGTCGGTTACATTTACAAACGACTTCCAGAGCCGGTTACTACTGGTATCTACGAATGTAATTCGAGATGCAAATGCGCGGTAAAAACTTGTCTAAACAGGGTCGTTCAACATcctctaactttaaaattgcaagTATTTAAAACAGCACCACGAGGTTGGGGAATCAGATGTCTCAATGACATTCCACAGGGTTCATTCATCTGCATTTACGCTGGAAGATTACTCACAGAACAGggAGCCAACGAAGGAGGCAAAAACTATGGTGATGAATATCTTGCCGAGTTAGATTACGTTGAAGTTGTCGAAGGTATAAAGGAAGGGTATGAGGCAGACGTTCTTGATCCTGAATTAGACTTAAGTGGTGGATCAAACTTAAAGGACATGTTGAGCGACGAAGATGACATATCTAAACCTCCTGATAACGAGTCAGATGAAGACTTTGATATCAGTAAATATCGTGACGATGTAAGTCTGAGATTGGGCTCAGAGGATACTTCCATTAGCAAACGCCTTCGAAAGCGGAAGAAGGGAGATAAATCGAAAGACGAGGCTGCAGAAGATGATAAGAAAAACAAAGTAGTTTCTAAAGCAGATCCAAAATCTTCTAAGACCGATTCAAAATCCTCTAAACCAGATTCAGAAAAATCAGAAAGTCGGGATTCTAATTATGATACCATCACATTAAGTGACGAAGAAGAATCGAATCGACGAGAACCAGGGAAGTTCGATTTAATAGTCGAACCAACACAAATGGAaagatcaaattttaaatctgtaaGGGATTTCTTTGGTGAAGACGAGGCTGTTTATATCATGGATGCCAAAACAAATGGAAATATAGGTCGATACCTTAATCATTCCTGTGACCCGAACGTTTTTGTTCAGAATGTATTTGTGGACACTCACGATGTTCGATTTCCTTGGGTAGCTTTCTTCGCTCTTCGATACATAAGAGCTGGTCAAGAATTGACTTGGAATTACAGTTACGACGTGGGCAGTATCCCGGGCAAAATTATTATCTGCAAATGTGGAGCATCGAATTGTAGGGGTCGTCTTCTCTAA
- Protein Sequence
- MTLENAEIIELISDDESEEEKTKDKKKKTCNANCINFQCSSGLNIKTAPSFACRYYGVNMSKKKKRIICEECLNIAIQHQQTLVNSLLDHKSLLSCDFPDHTMEVEISDSDDSDSEKKNDGEDSYLPEEFLLDLEEKLETSLAKVKVKYDVDFQVSEAHKTLHNQWEKIHIENNELDEQIKNMMGNLDKLRNSLYNEFKPSIKMLEELTICDGVQDNHQYPLVATKKVTQVRPSTSMFVQDNQPIILEEIERDSVKAVVDLPPPGPLIKTLPEIDTIVLIMKHALIPWLKGKIVTVVSRSPSQYKVKLLAKKNNQALKLITGKQLAIAVPSSVIIPVATRVVALFHDVTCSNFYSGVIAEPPKSTNKYRYLVFFDDGYAQYVIHKNIYLVSESSPQVWEDVPSPSRDFVKKYMESYPERPMVKLQQGQVVKTEWNGKWWIARVVQVDASLVQMHFDADNRTEWIYRGSARLGPLYVELLKANARQQGSHVGHNAPSRHRLPASTNKTNLPYVEYTNSIEQEELLNRKVEQKPTPVITSNNLRISDKVVTEVPTVPTQQSRAVAKKSTTKKPILPEPTYNTSAETKPSHSIVVSQDIYYQTQNRKNPKKYIPHRCSPKCLESCSFTPDDLKGYSPLSIPLLCGWNRQLCKFSKGKKVTLYHAPCGVRLRNMEELHQYLRLTKSPMSVDLFEFDHWVHCLAEFVLDKCFVNIKDLSYGAENVPIPCVNEIDHALPDTIRYSTQREPTEGVHLNLDPEFLCCCDCTDDCQDKDKCQCWQLTIQGATLGGRVPNTAVGYIYKRLPEPVTTGIYECNSRCKCAVKTCLNRVVQHPLTLKLQVFKTAPRGWGIRCLNDIPQGSFICIYAGRLLTEQGANEGGKNYGDEYLAELDYVEVVEGIKEGYEADVLDPELDLSGGSNLKDMLSDEDDISKPPDNESDEDFDISKYRDDVSLRLGSEDTSISKRLRKRKKGDKSKDEAAEDDKKNKVVSKADPKSSKTDSKSSKPDSEKSESRDSNYDTITLSDEEESNRREPGKFDLIVEPTQMERSNFKSVRDFFGEDEAVYIMDAKTNGNIGRYLNHSCDPNVFVQNVFVDTHDVRFPWVAFFALRYIRAGQELTWNYSYDVGSIPGKIIICKCGASNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391106; iTF_01392772; iTF_01390217; iTF_01391977; iTF_01393522; iTF_00676724; iTF_01389430; iTF_00011098; iTF_00980122; iTF_00200752;
- 90% Identity
- iTF_01391106;
- 80% Identity
- -