Smag012974.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- egg
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000040.1:5856252-5860879[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.6 4.8e+03 -1.9 0.0 46 74 592 618 590 621 0.82 2 2 9.5e-14 7.5e-10 39.1 0.0 5 71 622 682 618 687 0.88
Sequence Information
- Coding Sequence
- ATGGCACAAGCAGACGCGGAAATCATAGAATTGATTTCTGACGAGGAATCGGAGGAAGAAAAGAAACAAGATAAGAAACTGAAAACTTGCAATGCGAATtgcattaattttcaatgcagTTCTGGACTAAATATGAAAACAGCTCCCACTTTTGCTTGTACATTTTATGGCGTAAATATGGccaaaaaaaagaagagaattaTTTGCGAACAGTGTCTTAATATTGCTATTCAACATCAGcagaCACTTGTCAATACACTTCTCGATCGAAAGCCCTTGCTAAGTTGCGATTTCCCTGACCACACAATGGAGGTGGAGATTTCTGACAGCGATGACTCTGAcagtgaaaagaaaaatgacgACGAAGACTCTTACTTGCCAGAGGAATTCCTCTtggatttagaaaaaaaattggaagctTCTTTAGCCAATGTTAAAGTCAAGTATGATGTCGACTTTCAAGTATCAGAAGCTCATAAAACCCTTCATAATCAATGGGAGAAAATTCATATTGAGAATGATGAACTTgatgaacaaataaaaaacatgATGGGCAAGTTGGATAAGTTACGGAACTCGCTTTACGATGAATTCAGACCAAGTATAAAAATGTTGGAGGAACTTACGATATGTGATGGAGTGCCGGATAATCATCAATACCCACTAGTTGCCACGAAAAAGGTCACTCAAGTTCGACCTTCAACTTCAATTTTAGTTCAAGATAATCAGCCTGTTATTCTCGaagaaatagaaagggatagtgTAAAGGCTGTTGCGGATTTGCCTCCACCAGGTCCACTTGTAAAAACCCTCCCCGAAGTCGACACAATCGTTCTAATTATGAAACACGCTCTTATTCCTTGGATGAAGGGCAAGATCGTTAGTGTCGTTAGCCGGAGCCCTTCTCAGTATAAAGTGAAACTGCACGCAAGGAAAAATAATCAAACACTTAAGATAATTACTGGAAAACAACTAGCTATTGCCGTTCCAAGTTCTGTAATTATTCCAGTTGCAACGCGAGTCGTCGCTCTTTTTCACGATGTAACCTGCAGCAATTTTTACAGTGGTGTTATTGCTGAGCCTCCAAAGTCTACAAATAAATATAGGTATCTGGTATTTTTTGACGACGGATATGCGCAGTACGTAATTCACAAGAACATTTATCTTGTCTCCGAGAGTTCTCCCGAAGTTTGGGAAGATGTACCAAGTCCCTCTCGAGATTTTGTTAAGAAATATATGGAGTCTTATCCAGAAAGACCGATGGTAAAATTACAGCCAGGACAAGTAGTAAAAACGGAGTGGAACGGAAAGTGGTGGATAGCACGAGTTGTCCAGGTCGACGCCAGCTTGGTTCAAATGCATTTCGATGCAGATAATCGAACCGAGTGGATTTACAGAGGATCTGCGAGATTAGGCCCACTTTACGTCGAATTGCTGAAAGCCAATGCAAGACAACAAGGAAGTCATGTTGGTCACAATGCTCCATCTCGCCATCGACTCCCAGCTTCTACTAACAAAACCAACTTGCCCTATGTGGAATACACTAATTCCATCGAGCAAGACGAACTCCTCAATCGCAAACCCGTCATCACTTTCAACAATCTCCGTATAAATGATAAAGTTGTGAGCGAAATTTCCTCTATTCCTACTCAACAATCACGCGCTGTTGCTAAAAAGAGTACCACAAAAAAACCAATCCTTGCGGAGCCTACTTATAACACCAACACTGAGACGAAACCTTCGCATAGTATTGTTTATTACCAGACTCAAAACAGgaaaaatccaaagaaatatttacctCACAAATGTGGTCCAAAGTGTCTCGATAGTTGTTCCTTTACTCCGGATGATTTGAAGGGATATTCTCCACTTTCGATTCCATTGCTCTGTGGATGGAACAGACAGCTTTGTAAATTCTCAAAAGGAAAAAAGGTGACTTTATATCATGCACCGTGTGGAGTTAGACTTCGAAATATGGAAGAACTTCATCAGTATTTAAGACTTACTAAGAGTCCGATGTCGGTTGATTTATTCGAGTTTGATCACTGGGTTCACTGTCTTGCAGAGTTTGTTCTTGATAAGTGTTTCGTTAATATCAAGGATTTGAGTTATGGAGCAGAAAACGTTCCTATTCCATGTGTTAATGAAATCGATCATGCTCTTCCTGATACGATTCGGTATAGCACTCAAAGAGAACCGACAGAGGGTGTTCATCTTAATTTggatccagaatttttgtgttGCTGTGACTGCACCGACgattgtcaggACAAAGATAAGTGTCAGTGCTGGCAGTTAACAATTCAGGGTGCAACTCTAGGTGGTCGAGTTCCAAACACCGCTGTCGGTTACATTTACAAACGACTTCCGGAACCAGTTACTACTGGTATCTACGAATGTAATTCGAGATGCAAATGCGCAGTAAAAACTTGTCTAAACAGGGTCGTTCAACATCCTCTAACTCTAAAattacaagtatttaaaacAGCACCACGAGGTTGGGGAATCAGATGTCTCAATGATATTCCCCAGGGTtcatttatttgcatttacGCTGGAAGACTACTCACAGAACAGGGAGCCAACGAAGGAGGCAAAAACTATGGTGATGAATATCTTGCCGAATTAGATTACGTCGAAGTTGTCGAAGGTATAAAGGAAGGCTATGAGGCAGATGTTCTTGATCCTGAATTAGACTTAAGTGGTGGATCAAACTTAAAGGACGTGTTGAGCGACGAAGATGATACATCTAAACCTCCTGAGAACGAGTCTGATGAAGACTTCGATATCAGTAAATATCGTGACGATATAAACCTGAGACTGAACTCAGAAGATACTTCCATTAGcaAACGCCTTCGAAAGCGAAAGAAGGGAGATAAATCGAAAGACGAGGCTGCAGATGATGATAAGAAAAACAAAGTAGTTTCTAAAgcagatccaaaattttcaaggtcCGATTCAAAATCCTCTAAACCCGATTCAGAAAAATCAGAAAGTCGGGATTCTAATTATGATACCATCACACTGAGTGACGAAGAAGAATCGAATCGACGAGAGCCAGGGAAGTTAGATTTAACAGTTGAACCAACTCAAATGGAaagatcaaattttaaatctgtaagGGATTTCTTTGGTGAAGACGAGGCTGTTTATATCATGGATGCCAAAACAAATGGAAATATTGGTCGTTACCTTAATcatTCCTGCGACCCGAACGTTTTTGTTCAAAACGTCTTCGTGGACACTCACGATGTTCGATTTCCTTGGGTAGCTTTCTTCGCTCTTCGGTACATAAGAGCCGGTCAAGAATTGACTTGGAATTACAGTTACGACGTGGGCAGTATTCcgggaaaaataattatctgcAAATGTGGAGCGTCGAATTGTAGGGGTCGTCTTCTGTAA
- Protein Sequence
- MAQADAEIIELISDEESEEEKKQDKKLKTCNANCINFQCSSGLNMKTAPTFACTFYGVNMAKKKKRIICEQCLNIAIQHQQTLVNTLLDRKPLLSCDFPDHTMEVEISDSDDSDSEKKNDDEDSYLPEEFLLDLEKKLEASLANVKVKYDVDFQVSEAHKTLHNQWEKIHIENDELDEQIKNMMGKLDKLRNSLYDEFRPSIKMLEELTICDGVPDNHQYPLVATKKVTQVRPSTSILVQDNQPVILEEIERDSVKAVADLPPPGPLVKTLPEVDTIVLIMKHALIPWMKGKIVSVVSRSPSQYKVKLHARKNNQTLKIITGKQLAIAVPSSVIIPVATRVVALFHDVTCSNFYSGVIAEPPKSTNKYRYLVFFDDGYAQYVIHKNIYLVSESSPEVWEDVPSPSRDFVKKYMESYPERPMVKLQPGQVVKTEWNGKWWIARVVQVDASLVQMHFDADNRTEWIYRGSARLGPLYVELLKANARQQGSHVGHNAPSRHRLPASTNKTNLPYVEYTNSIEQDELLNRKPVITFNNLRINDKVVSEISSIPTQQSRAVAKKSTTKKPILAEPTYNTNTETKPSHSIVYYQTQNRKNPKKYLPHKCGPKCLDSCSFTPDDLKGYSPLSIPLLCGWNRQLCKFSKGKKVTLYHAPCGVRLRNMEELHQYLRLTKSPMSVDLFEFDHWVHCLAEFVLDKCFVNIKDLSYGAENVPIPCVNEIDHALPDTIRYSTQREPTEGVHLNLDPEFLCCCDCTDDCQDKDKCQCWQLTIQGATLGGRVPNTAVGYIYKRLPEPVTTGIYECNSRCKCAVKTCLNRVVQHPLTLKLQVFKTAPRGWGIRCLNDIPQGSFICIYAGRLLTEQGANEGGKNYGDEYLAELDYVEVVEGIKEGYEADVLDPELDLSGGSNLKDVLSDEDDTSKPPENESDEDFDISKYRDDINLRLNSEDTSISKRLRKRKKGDKSKDEAADDDKKNKVVSKADPKFSRSDSKSSKPDSEKSESRDSNYDTITLSDEEESNRREPGKLDLTVEPTQMERSNFKSVRDFFGEDEAVYIMDAKTNGNIGRYLNHSCDPNVFVQNVFVDTHDVRFPWVAFFALRYIRAGQELTWNYSYDVGSIPGKIIICKCGASNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394302;
- 90% Identity
- iTF_01391106;
- 80% Identity
- -