Slae000436.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000001.1:2952499-2956702[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5e-05 0.0033 18.5 0.7 1 23 151 173 151 173 0.95 2 15 0.00065 0.089 14.0 1.2 3 23 181 201 180 201 0.99 3 15 0.00058 0.079 14.2 0.1 1 23 324 346 324 346 0.98 4 15 0.046 6.3 8.2 0.4 1 23 352 375 352 375 0.97 5 15 9.6e-05 0.013 16.6 3.3 1 23 403 425 403 425 0.97 6 15 1.7 2.3e+02 3.3 0.0 1 23 440 462 440 462 0.86 7 15 0.23 31 6.0 0.1 2 23 469 491 469 491 0.93 8 15 0.0032 0.43 11.8 2.9 2 19 499 516 499 520 0.95 9 15 3.4e-05 0.0047 18.0 3.6 1 23 526 548 526 548 0.97 10 15 0.014 1.8 9.9 0.1 3 23 555 575 554 575 0.97 11 15 7.9e-06 0.0011 20.0 0.4 1 23 584 606 584 606 0.98 12 15 0.00034 0.046 14.9 0.3 1 23 612 634 612 634 0.98 13 15 0.00096 0.13 13.5 0.3 3 23 642 662 640 663 0.95 14 15 0.0058 0.79 11.0 0.0 1 23 677 699 677 699 0.93 15 15 0.015 2 9.8 0.1 1 20 1088 1107 1088 1110 0.93
Sequence Information
- Coding Sequence
- ATGGACGTTGCCGAGGAAATGACTCTGCACTGGGCAGAGGACGTCGGTAACGTTATCCACGAAGAAGTATGTGGCTTGGAGGAGGAAATCGTCTCCCAGGAAGAGGTAATCGTCTCGCAGGAAGAAGTGATCGGCGCTTGCGAAGAGGTCGTGGAGGAAACAGTCGAGGAAGAAATGCTCGTGCAGCCTCCGGAACCAGATACCGAGATTCTCATGGTTCCTCAGTCAAACGACATGGAGTCGATATACATAGTTTCTCAGGACCAAGGTCATGATTATTTCAACATACAAGTCACGGAAGAGGTCGTGGCCGACAATTGGGACAGATCTGGACCAGACGATGGGGTCGAGATTCCTGAGACAAAGGTCTCTCATGACAATTTGCTTGAATACGATGATATGGAGATTCCCTTGCCAATTGATCAAGATTCCTACACAAACACACGACCCTATCCCTGTGACTTCTGCAGTCGTCGATTCAGGAAAAAAGCGAACCTGATGAACCACATGGTGGCTCATCAAACAGACAAACCCCATGGGTGCAATCTATGTGGAGCACGTTACGCCAGAAAATGCGATCTCATGAATCATCAGAAAATTCATGCTTATGCACCTTCGCGTGACGGTCTCGAGGAGGATTTAAACGACGAGGATCCTTTGATGCAGGAGGAGGAAACCACGACGAAAGGCCGACGGAAGAAGGTCCAGTCGAGCGCTCCTAGAAGACGCAAGAACAACACCTCAGCTTCTCTGAAGCGGAACTACCAAGATGAGTCCAAACTTGATGTTGGTAAGCTTGTTAATAAATCTTATAACTACGTGGACGAGGATATGCGACTCCTGGAGGAGATGACTAGTCGCAGTTCGACTCGAGGAAATAATCTAGCTTCTAGCTCGCGATGGACTGATCAGTTGGTCGTTAATGAAGGCCAGGCTCCTCGCTGGCCTATCACAGATCCTACAAAGCCCTATGTTTGTCAATTCTGTGGAGTCGGCTTTGCTAGAGAAAAAGCCTTGGCTTCTCATTCTCGTATTCATGGCGGTGACAGTCCTTTCGAGTGCACTTCTTGCGGAGAATTGTATTGGGACACAAATTCTCTCCGAGAACATATGAGATCCAAACACGGCGCGGCGGTGCCGATGGAGTCAGAAGTCGTGGTTGCAACCACTGAAACCACCTACACAGGCGATGAGAGATTTGGGGAATTCTTTTGCGATACTTGTGGCACTGCTTTCCATCGGCTAGATCTTCTCAAGCGTCATCGAAAgatGCATGTAAAGCAGGAGGTCGAAATGACGGAAGGATCGAGTCAACACCATGTTTGTAACGTTTGTGGAGAATGGTTTGAGGAAGCTTTGGCTCTTTTAGCTCATGCGGAACTGCACGctagATCACCTAGTCGTCGTTGTCTCTTGTGTGGCGAGGTTTGTCGCGATGAAGCTGATGTCGCAGAGCACGTGCAGCAAAATCACGCTGACGATGCACCGCCAAACACCTGCGATCAGTGCGGAAAAACTTGCAAGGACAAGCGCAGTTTGTTAAAACATTCTTGGGTTCACAACACTGATAAGACATTTATATGCACTAAATGTGGTAAGCGGTTTCACAGTAAAGCGAGACTACGCagaCACATGGTCTCACATCGTAACAAGATGGTCGCATGTGACGAGTGTGGAGAGGAATTCCCAGACGGAAGAGCCCTCGTCAGTCATCGTCATTCGCATAATAAGGACCTGGGAGGTCGATCTTTCCCTTGCAGAGAGTGCGGAAAGACCTTTGGAAGCCGAAGCTCTCAGCAGATACACATTCGTATTCACACTGGCGAGCGTCCTTACTCGTGTCGCTTTTGCTGGAAGGCTTTCGCTGATGGCGGAACTCTTCGAAAGCATGAGCGCATTCACACTGGCGAGAAGCCCTACGGATGCACCATTTGTCCCCGTGCATTCAATCAAAGGGTTGTTTTACGAGAACACGTGAGAGCTCATCATTCCGGCCCAGACCCCAAGTGTCACGGAAGCATGACTCCTTATTTGTGTAAAGTTTGTGGTGAAGCATATGCCACTTCAGATGAAATTGTCGCCCACATAGTTCAGCATTGTGACGACAACACAGCTCAGCGAAGACAGCCTCAAACCGGACCCCGGAAATACAAAAGGAGACGCAAAATAAAGACCCAGGAGTCTAGCGCCCCTCCTCGAGTTTCTGAGAATTACGATATGATGGATGCCTCCGACTCCGACGAAAACCCGAAGCGAAAGCTGGGAAGGAAGTCGAAGACTCGTGTAGATGTTCAAGAAGGTTACCAGAATGTTCTTAAGAGTTTTGAGACGTCGCTTCAGAACATCAATCAAATCGTCAGTAATTCTAAAGTGAATCCTGCGAAGGCGAAACTCACCAAAAAGAAGGTCAAGcgagaagaaaagaaagtagATCCACCAGCCGCGGCTCCTCTCGGCAGGTCGAAGATGATTCACACTCAGAAAACGAGAGTTCCTGTCGAGATTGGTAGCGAGGGAGTGAAAAAAGGTCAAAAGACCAAGACAATGATTACGAGAACTCCTAAAGTGATGACCAAGGAACACAAACTAGGGATTTTCCCTGGAGGCGAGAGAAATCGACCGAGGACGAAGAATGTGAGTTACCACATCGAGAACAAGAACCAAATCACTCCAGCTACTTTTTCAAAGTCTAAGGAAAACGAGAAAGATTTCTCGGCTGATGATTCCCAAGAAATCAACAAGCAGATCGAGTCTGAAATAGAAACTTCGATTGAAGAAACATCTATATCCGGTATGGTCAACGTCAAGCTGGAGCCCGGTCTCCAAAAAGGCCAGAACCACGCGAATAATAATGGAAGTATCTCAGAAGATCACAAACCCACTCCAAAGAGAAAGGCGCCTGTGAGACGAGGAAGGAGAGGCCGCCAGGTAGCAATCAAGCAAGAACCTAGGGAGGAAATTGTCGAGGTGCCTAGTGCGGATATTGAGGAAACTGTTGAGACAGGACCTCTCACTGAACAGATCGTCGACGGAAATACGATGGAGGTTGCCTTCGAGGCTAATGTCGTTTCCACTGAGGAATCTATTCTCCCTGATCTTGAAAAGACTAATCACAATGAGGAAATAAAGGGGAAGGAGAACGTCAAGGTCAATGTAAAGGTCGAGTCGACACCTCAACGTATTGTTTCCGCTCATAATATAATCGTGCCTCTCGAAGAAGCCACAGAAACTATTATTCCTGATGCTCTCGAGAGTCTTGAGCACACCTGCGAAATGTGTTCAGCGGTTTTCCCCAGTCATGCTGAACTCCTTGTTCACATCCCGATTCATATTTGA
- Protein Sequence
- MDVAEEMTLHWAEDVGNVIHEEVCGLEEEIVSQEEVIVSQEEVIGACEEVVEETVEEEMLVQPPEPDTEILMVPQSNDMESIYIVSQDQGHDYFNIQVTEEVVADNWDRSGPDDGVEIPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDKPHGCNLCGARYARKCDLMNHQKIHAYAPSRDGLEEDLNDEDPLMQEEETTTKGRRKKVQSSAPRRRKNNTSASLKRNYQDESKLDVGKLVNKSYNYVDEDMRLLEEMTSRSSTRGNNLASSSRWTDQLVVNEGQAPRWPITDPTKPYVCQFCGVGFAREKALASHSRIHGGDSPFECTSCGELYWDTNSLREHMRSKHGAAVPMESEVVVATTETTYTGDERFGEFFCDTCGTAFHRLDLLKRHRKMHVKQEVEMTEGSSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGEVCRDEADVAEHVQQNHADDAPPNTCDQCGKTCKDKRSLLKHSWVHNTDKTFICTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYSCRFCWKAFADGGTLRKHERIHTGEKPYGCTICPRAFNQRVVLREHVRAHHSGPDPKCHGSMTPYLCKVCGEAYATSDEIVAHIVQHCDDNTAQRRQPQTGPRKYKRRRKIKTQESSAPPRVSENYDMMDASDSDENPKRKLGRKSKTRVDVQEGYQNVLKSFETSLQNINQIVSNSKVNPAKAKLTKKKVKREEKKVDPPAAAPLGRSKMIHTQKTRVPVEIGSEGVKKGQKTKTMITRTPKVMTKEHKLGIFPGGERNRPRTKNVSYHIENKNQITPATFSKSKENEKDFSADDSQEINKQIESEIETSIEETSISGMVNVKLEPGLQKGQNHANNNGSISEDHKPTPKRKAPVRRGRRGRQVAIKQEPREEIVEVPSADIEETVETGPLTEQIVDGNTMEVAFEANVVSTEESILPDLEKTNHNEEIKGKENVKVNVKVESTPQRIVSAHNIIVPLEEATETIIPDALESLEHTCEMCSAVFPSHAELLVHIPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980368;
- 90% Identity
- iTF_01389665; iTF_01393737; iTF_01392213; iTF_01390533; iTF_01391408;
- 80% Identity
- -