Basic Information

Insect: Synergus japonicus
Gene Symbol: -
Assembly: GCA_900474275.1
Location: UCOH01012706.1:22957-26952[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6e-05 0.0027 18.5 0.7 1 23 149 171 149 171 0.95

2 15 0.00069 0.071 14.0 1.2 3 23 179 199 178 199 0.99

3 15 0.00061 0.063 14.2 0.1 1 23 322 344 322 344 0.98

4 15 0.0016 0.17 12.9 0.5 1 23 350 373 350 373 0.98

5 15 9.7e-05 0.01 16.7 2.8 1 23 401 423 401 423 0.97

6 15 1.8 1.8e+02 3.3 0.0 1 23 438 460 438 460 0.86

7 15 0.36 37 5.5 0.2 2 23 467 489 467 489 0.94

8 15 0.0033 0.34 11.9 2.9 2 19 497 514 497 518 0.95

9 15 3.8e-05 0.004 18.0 4.4 1 23 524 546 524 546 0.97

10 15 0.014 1.5 9.9 0.1 3 23 553 573 552 573 0.97

11 15 7.4e-06 0.00076 20.2 0.3 1 23 582 604 582 604 0.98

12 15 0.00036 0.037 14.9 0.3 1 23 610 632 610 632 0.98

13 15 0.001 0.1 13.5 0.3 3 23 640 660 638 661 0.95

14 15 0.049 5 8.2 0.0 1 23 675 697 675 697 0.93

15 15 0.036 3.7 8.6 0.1 1 20 1085 1104 1085 1107 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6e-05	0.0027	18.5	0.7	1	23	149	171	149	171	0.95
2	15	0.00069	0.071	14.0	1.2	3	23	179	199	178	199	0.99
3	15	0.00061	0.063	14.2	0.1	1	23	322	344	322	344	0.98
4	15	0.0016	0.17	12.9	0.5	1	23	350	373	350	373	0.98
5	15	9.7e-05	0.01	16.7	2.8	1	23	401	423	401	423	0.97
6	15	1.8	1.8e+02	3.3	0.0	1	23	438	460	438	460	0.86
7	15	0.36	37	5.5	0.2	2	23	467	489	467	489	0.94
8	15	0.0033	0.34	11.9	2.9	2	19	497	514	497	518	0.95
9	15	3.8e-05	0.004	18.0	4.4	1	23	524	546	524	546	0.97
10	15	0.014	1.5	9.9	0.1	3	23	553	573	552	573	0.97
11	15	7.4e-06	0.00076	20.2	0.3	1	23	582	604	582	604	0.98
12	15	0.00036	0.037	14.9	0.3	1	23	610	632	610	632	0.98
13	15	0.001	0.1	13.5	0.3	3	23	640	660	638	661	0.95
14	15	0.049	5	8.2	0.0	1	23	675	697	675	697	0.93
15	15	0.036	3.7	8.6	0.1	1	20	1085	1104	1085	1107	0.93

Sequence Information

Coding Sequence: ATGGACGTTACCGAGGAAATGACTCTACATTGGGTAGAGGACGTCGGTAACGTCATTCACGAGGAAGTATGTGGCTTGGAGGACGGGGACATTATCGCCCAGGAAGAGGAGGTGATTGGAGCTTGCGAAGAGGTCGTGGAGGAAACAGTCGAGGAAGAAATTGTCGATCAGCCTCCAGAGCCAGATGCTGCAGATACCGAGATTCTCATGGTTCCTCAGACAAGCGACATGGAATCGATATACATAGTTCCTCAGGACCAAGGTCACGATTATTTCAACATACAAGTCACGGAAGAGGTCGTGGCCGATAATTGGGACAGATCTGGACCTGACGATGGGGTCGAGATTCCCGAGACAAAAGTCTCTCATGACAATTTGCTTGAGTACGATGATATGGAGATTCCTTTGCCGATCGATCAAGATTCCTACACGAACACAAGACCGTACCCCTGCGACTTCTGTAGTCGTCGATTCAGGAAAAAAGCGAACCTGATGAACCACATGGTGGCTCATCAAACAGACAAACCACATGGGTGTAATCTATGTGGAGCCCGTTACGCCAGAAAATGCGATCTCATGAATCACCAGAAGATTCACGCCTATGCACCATCGCGTGACGGTCTCGAGGATGATTTAAACGACGAGGATCCTTTAATGCAGGAGGAGGAGGAAACTACGAAAGGCCGACGGAAGAAGGTACAATCGAGCGCTCCTAGAAGACGCAAGAACAACACAGCAGCTTCTATGAAGCGGAATTACCAAGATGAGTCTAAACATGATGTTGGGAAGATTGTTAATAAATCTTACAACTACGTGGATGAGGATATGCGACTCCTGGAGGAGATGACAAGTCGCAGTTCGACTCGGGGAAATAATCTGGCCTCCAGCTCACGATGGACAGAACAGATGGTCGTTAATGAAGGTCAGGCTTCTCGCTGGCCTATCACAGACCCTACGAAGCCGTATGTTTGTCAATTTTGCGGAGTTGGATTTGCCAGAGAAAAAGCTTTAGCTTCTCACTCTCGAATTCATGGTGGTGACAGTCCTTTTGAGTGCACGACATGCGGAGAAATGTACTGGGATACGAATTCTCTCCGAGAACACATGAGATCCAAACATGGGGCGGCGGTGCCGGTGGAGTCCGAAGTCGTGGTTGCAACCACCGAAACCAATTACACGGGCGACGAGAGATTTGGGGAATTCTTTTGCGACACCTGTGGCACTGCTTTCCATCGGCTGGATCTTCTTAAGCGTCACCGAAAgatACACGTGAAACAGGAGGTGGAAACGGTAGAAGGATCGAGTCAACACCATGTTTGTAACGTTTGTGGAGAATGGTTTGAGGAAGCTTTGGCTCTTCTAGCTCATGCAGAGTTGCACGCTAgGTCTCCTAGTCGTCGCTGTCTCTTGTGTGGCGAGGTTTGTCGCGATGATGCGGAAGTTGCAGAACACGTACGGCAAAACCACGCAGACGATGCGCCGCCAAACACCTGCGATCAGTGTGGGAAAACTTGCAAGGACAAGCGCAGTTTATTAAAACATTCGTGGGTTCACAACGTTGATAAGACATTCAGCTGCACTAAATGTGGCAAGCGGTTTCACAGTAAAGCGAGACTGCGCAGaCACATGGTCTCGCATCGTAACAAGATGGTTGCATGTGACGAGTGTGGAGAGGAATTCCCAGACGGAAGAGCCCTCGTCAGTCATCGTCATTCGCATAATAAGGACCTGGGAGGTCGATCTTTCCCCTGCAGAGAGTGCGGGAAATCCTTTGGAAGCCGAAGCTCTCAACAGATACACATTCGCATTCACACTGGCGAGCGTCCTTACTCGTGTCGATTTTGCTGGAAGGCTTTCGCCGATGGCGGAACTCTTCGGAAACATGAGCGTATTCACACTGGCGAGAAACCCTACGGATGCACTATTTGTCCCCGTGCATTCAATCAAAGGGTCGTTTTACGAGAACACGTGAGAGCTCATCATTCCGGTCCAGATCCCAAATGTCACGGAAGCATGAATCCTTATTTGTGTAAAGTTTGTGGCGACGCATTTGCCACTTCAGATGAAATTGTCGCTCACATAGTTCAGCATTGCGACGAAAACACAGCCCAACGAAGACAACCTCAAACCGGACCCCGGAAATACAAAAGGAGGCGTAAAATAAAGTCCCAAGACTCGACCGTTCCCCCTCGAGTTTCTGAGAGTTATGAAATGAATGATGCCTCCGACTCTGAGGACAACACGAAGCGAAAGCTTGGAAGGAAATCAAAGACTCGCTCAGATGTTCAAGAAGGTTACCAAAATGTTCTCAAGAGCTTTGAGACCTCGCTCCAGAACATCAATCAAATCGTCAGTAATTCTAAAGTGAATCCTGCGAAGGCGAAACTCGCCaaaaagaagatgaagaaagaggaaaagaaaGTGGAGCCACCAGTCGCAGCTTCTCTCGGCAGGTCGAAGATGATTCACACTCAGAAAACAAGAGTGCCTGTCGAGATTGGCAGCGAGGGAGTGAAAAAGGGTCAAAAGACCAAGACGATGATTACCAGGACTCCAAAAGTGATGACCGGTGAACACAAACTAGGAATTTTCCCTGGTGGCGAGAGAAATCGACCGAGGACGAAGAACGTGAGCTACCATGTCGAGAACAAGAACCAAGTCACTCCAGCTACTTTTCCAAAGTCCAAAGAGTGCGAGAAAGATCTCTCGGCTGATGATACCCAAGGAGGTGACAAGCAGACGGAGTCTGAAATAGAGACTTCGATTGAAGAAACATCTATATCGGGTATGGTCAACGTCAAGCTGGAACCCGGCCTTCAAAAAAGCCAGAACCACGCGAATAATAACGGAAGCATCTCAGAGGATCAGAAACCCACTTCAAAGAAAAAGACGCCTGGAAGGCGAGGAAGGAGAGCCCGACAGGTAGTTATCAAGCAAGAACCTAGGGAGGAAGTTGTCGAGATTCCCAGCACAGATATTGAGGAAACTATTGAAACAGGGCCTCTCACTGAACAGATTGTCGATGGAAATACGATGGAGGTTGCCTTCGAGGCTAATGTCGTTTCCACCGAGGAATCTATTCTCCCTGATCTTGAAAAAACGAACCACAATGAGACTGTGGGGAAAGAGAATGTTAAGGTCAATGTGAAGGTCGAGTCGACGCCACAGCGTGTTGTTTCCGCTCATAATCTAATTGCGCCTCTCGAAGAAGCCACGGAAACTATTATTCCCGATGCTCTCGAAAGTCTTGAGCACACCTGCGAAATGTGTTCAGCTGTTTTTCCCAGTCATGCTGAGCTCCTTGTTCACGTCCCAATTCACATTTGA
Protein Sequence: MDVTEEMTLHWVEDVGNVIHEEVCGLEDGDIIAQEEEVIGACEEVVEETVEEEIVDQPPEPDAADTEILMVPQTSDMESIYIVPQDQGHDYFNIQVTEEVVADNWDRSGPDDGVEIPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDKPHGCNLCGARYARKCDLMNHQKIHAYAPSRDGLEDDLNDEDPLMQEEEETTKGRRKKVQSSAPRRRKNNTAASMKRNYQDESKHDVGKIVNKSYNYVDEDMRLLEEMTSRSSTRGNNLASSSRWTEQMVVNEGQASRWPITDPTKPYVCQFCGVGFAREKALASHSRIHGGDSPFECTTCGEMYWDTNSLREHMRSKHGAAVPVESEVVVATTETNYTGDERFGEFFCDTCGTAFHRLDLLKRHRKIHVKQEVETVEGSSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGEVCRDDAEVAEHVRQNHADDAPPNTCDQCGKTCKDKRSLLKHSWVHNVDKTFSCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRSFPCRECGKSFGSRSSQQIHIRIHTGERPYSCRFCWKAFADGGTLRKHERIHTGEKPYGCTICPRAFNQRVVLREHVRAHHSGPDPKCHGSMNPYLCKVCGDAFATSDEIVAHIVQHCDENTAQRRQPQTGPRKYKRRRKIKSQDSTVPPRVSESYEMNDASDSEDNTKRKLGRKSKTRSDVQEGYQNVLKSFETSLQNINQIVSNSKVNPAKAKLAKKKMKKEEKKVEPPVAASLGRSKMIHTQKTRVPVEIGSEGVKKGQKTKTMITRTPKVMTGEHKLGIFPGGERNRPRTKNVSYHVENKNQVTPATFPKSKECEKDLSADDTQGGDKQTESEIETSIEETSISGMVNVKLEPGLQKSQNHANNNGSISEDQKPTSKKKTPGRRGRRARQVVIKQEPREEVVEIPSTDIEETIETGPLTEQIVDGNTMEVAFEANVVSTEESILPDLEKTNHNETVGKENVKVNVKVESTPQRVVSAHNLIAPLEEATETIIPDALESLEHTCEMCSAVFPSHAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00980368;
90% Identity: iTF_01392968;
80% Identity: -