Slae009285.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- Poxn
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000027.1:1-10981[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-63 5.1e-60 201.6 0.4 2 125 1 125 1 125 0.99 2 2 6.1 1.8e+04 -3.7 0.0 54 65 359 370 341 376 0.54
Sequence Information
- Coding Sequence
- cAAGCTGGAGTGAATCAACTGGGGGGTGTTTTCGTGAATGGCAGACCACTTCCAGATTGCGTGAGGCAAAGAATTGTTCAACTTGCATTGGTTGGAGTTCGACCTTGCGACATTTCCAGACAACTTTTGGTATCACATGGCTgcgtttctaaaattttaacgaGATTCTACGAGACCGGAAGCATTAGGCCTGGCAGCATCGGTGGAAGCAAAAcgaagCAAGTGGCTACTCCAAGTGTTGTGAAGAAAATCCTGCGGATGAAACAGGAAAATCCTACTATGTTCGCCTGGGAGATAAGAGAAGCACTTGCACGACAGGGAGCTTGCGATCCTCAAAGCTTACCTTCCGTGTCTTCGGTTAACCGGATACTGAGGGGTGGAGGTCTCCAGACTGAAAATTCTGGATTCGAGGGCGGATCTTCTACCACTTACCAGCCACAAATTCCCACCAACGTCGGTGGAGTTAGAGaaccaCTTCTTCGAGGagattatcaatttttctacCCTGGAGCCCTTGGCCCTTTACACGTATCGACAACTTCTGCAAGCTCTGGAACTCCAACCTGGAATCCAACTTTTTATTCGTCTCTTTATCAAGCCACCACTTTGCATTTGCATCATGGATCTCAATCTTTGGACTCAGACCGACTCGTAGATCGGCAAGAGAGCCAATCTCAGGTGGAGTTAAAATCTAGTTCGAGTTCGATGGCCGGAAGCGACGACTCCCTGGACAAAAGTGACCTGGACGAAACAACCGAGTCCCAGGACCACTTCAAACCTTACCAAAGATCTCCAATCATCCTCGAACTGGGGCAAAAAGTTGGAAGCGAGCGAAGCGCGTTCGTGAGACACGTAGTTGGAAATCAAAGCGAGAATTTCGACAATTCCTCTCGAAATCCTCCATCTCCACTGGAAAATCCTCCTAGGAACCACATGAATCGAGGGATTCTTGAAGGCAAACAAAATTCCAGCGACTTGAACACTGGAATCGAAAATCAACCGCCTCCGAGGAAGAAGAATCCTTACTCAATAGAGGAACTgttgaaaaaagatgaaacCAAAACGAGTTCAAAAAGGCCCAGGCTTCTTAACACTGGAGTCGTTCAGCCCTGTGGGATCATCGTCGGGAAAGAAGTCTGA
- Protein Sequence
- QAGVNQLGGVFVNGRPLPDCVRQRIVQLALVGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSIGGSKTKQVATPSVVKKILRMKQENPTMFAWEIREALARQGACDPQSLPSVSSVNRILRGGGLQTENSGFEGGSSTTYQPQIPTNVGGVREPLLRGDYQFFYPGALGPLHVSTTSASSGTPTWNPTFYSSLYQATTLHLHHGSQSLDSDRLVDRQESQSQVELKSSSSSMAGSDDSLDKSDLDETTESQDHFKPYQRSPIILELGQKVGSERSAFVRHVVGNQSENFDNSSRNPPSPLENPPRNHMNRGILEGKQNSSDLNTGIENQPPPRKKNPYSIEELLKKDETKTSSKRPRLLNTGVVQPCGIIVGKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200705; iTF_00089498; iTF_00460468; iTF_00879585; iTF_00882915; iTF_01389380; iTF_01390163; iTF_01394249; iTF_01391919; iTF_01391056; iTF_01393470; iTF_00881193; iTF_00011050; iTF_00880403;
- 90% Identity
- iTF_01389380;
- 80% Identity
- -