Sjap004124.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01000024.1:45619-50034[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.083 8.5 7.5 0.2 1 23 118 141 118 141 0.93 2 22 1.5e-05 0.0015 19.2 1.6 1 23 147 169 147 170 0.95 3 22 0.0001 0.01 16.6 0.3 2 23 176 198 175 198 0.95 4 22 0.0018 0.19 12.7 2.2 1 23 203 226 203 226 0.96 5 22 4.5e-06 0.00046 20.9 0.7 2 23 233 255 232 255 0.93 6 22 1.9e-05 0.002 18.9 0.8 1 23 261 283 261 283 0.97 7 22 0.0056 0.58 11.1 0.3 5 23 292 310 290 310 0.97 8 22 9.8e-05 0.01 16.7 1.3 1 23 562 585 562 585 0.97 9 22 0.00066 0.068 14.1 4.2 1 23 591 614 591 614 0.97 10 22 4e-05 0.0041 17.9 1.6 2 23 651 673 651 673 0.95 11 22 0.011 1.2 10.2 3.3 1 23 679 702 679 702 0.98 12 22 0.00075 0.077 13.9 0.8 2 23 807 829 806 829 0.94 13 22 0.0051 0.52 11.3 5.1 1 21 835 855 835 858 0.95 14 22 3e-05 0.0031 18.3 1.2 1 23 910 933 910 933 0.96 15 22 1.3e-05 0.0014 19.4 1.7 1 23 939 962 939 962 0.98 16 22 0.019 2 9.4 2.7 1 23 976 999 976 999 0.89 17 22 7.8e-06 0.0008 20.1 1.1 1 23 1005 1028 1005 1028 0.96 18 22 0.00033 0.034 15.0 4.4 2 23 1034 1056 1034 1056 0.95 19 22 6e-05 0.0062 17.3 2.5 1 23 1061 1083 1061 1083 0.94 20 22 0.0017 0.17 12.8 1.5 2 21 1090 1109 1089 1112 0.94 21 22 6.9e-06 0.00071 20.3 0.9 1 23 1118 1140 1118 1140 0.98 22 22 2.4e-06 0.00024 21.8 1.0 1 23 1146 1168 1146 1168 0.98
Sequence Information
- Coding Sequence
- ATGCGACCAAAAGGGGTTCCTATGAAGCCAAGATCTAGATTGCAAGTAAGAAAGGATGTTTTCATATCATTGTCGAGTATTAACTTCATAGATGCCCTAAAGAGAGACACCATCCAAGAGAAAGCAACTTCCTCATCACCTAAAACTTCTTCTGTACGAAAAAAAGTTATCCAGACGCAGAAACCAGCTTCACAACCAAGATCCAAAGTACCAAGAGCACCAAAAACACCGAAAGTACCAAAAGCACCTAAAACTAAAAACAAAGACTTAAATCAACCGCCGAAGCGAAGAAGAAGGAAGAAAGGATCTGATGAGACATCTGGAGAAAACAATTCTAAAGAGAAAGTTGAATTCATTTGCTCAGCCTGTGGGACagtatttgcaaaaaaagaaatacttcAGGCTCATTTCATAAGAAAACACACTGAAGGGTACAATTTCTCTTGTGACACATGTGGTAAACAGTTTAAACTCAAAGGTGACCTTGTAACTCACATTCGACTACATCACTTAGAACCACCTACAGTCTGCGATGTATGTGGTAAAACTTACAAAAACAGCCTTTCTCTCTATGTTCACCAGAAATATGCTCACTATAAAGCAAGATTTGAGTGCCAGACTTGTAAGCGATGTCTGGTTACTCAAGAAAATCTTGATCATCACATTGCAGTGATGCACGGACAAAGGCCCATTTTGGTTTGCGAGGAATGCGGAAAAACGTTTAATAAAAGAGTCAATCTTCGAAGACATTTTAACAATGTTCATACTAATAATAAAGCATACGTTTGCCCAGTTTGTAGTAAAGCTTTTGGTCAAACGTATCATTTGAGACAACATCTGCTTCTACACACGGGCAAGCGTATATATCGTTGTGAATGTGGAAAAGAATTTGCACAAAAACCGGGACTTTTGAGTCACAGAAAAAGTCATCCTGGTGAACATCCTCCTTTACCGATAATTCGATTAGATCAAgttcttaaggaatttttgaacaaGAAATGTGCAAGAGCAAAGCAAAGGCCAACATCTCTTCTCAGACTGCAGGAAAATCTCAAACAGCCTCTCACAACCACTCAAGCGTCTAAAACTAGATTTAACGTGGTTTCTACTTTAGTTCCAACATCGAAGCTGTTTCCAGCACTAGAGAAAACAGTTCAAGACTCAAATTTGTCAACACAATTAATGAATGTTTGTCAGATAcctaaaaaacaattaaaaatggttTCTACTTTAGTTCCAACATCGAAGCTGTTTCCAGCACTAGAGAAAACGGTTCAAAACTCAAATTTGGCAACACAATTAACGAATGTTTGTCAAATAcctaaaaaacaattaaaaatggttTCTACTTTAGTTCCAACATCGAAGCTGTTCCCAACTTACGCAGTTATGAATCTTAGTAAATTCAAAGATTCTTCAAAAGTGGTAATAAACACTACAAGTGAACCTGTTGTGGAATCGGATCCACTCGCACTCAATAATTCGGGACAATCTCTTTACAATGGAATTCATATTGGAATAGAATCATTCTTCGAAAATACTTCTGAGTCTTCTACAGCTGGTAAAACTGATAGCATCGTCAAAAGAAATCAATCTCTGCAAAACGAAGTGACACCAGAAATAACGATTAAAAAACCCGACCCTCTCTCTATTGAAAATATAGGCGTAGTGATATCAGGTATGTTCAAGTGTAAAGCTTGcgataaattattcaaacgCAAGGAGGCCTTGAAGGTTCATTACATTCGTTTACACTCAAATATTCATCGTTATTCTTGTGATGAATGTGgtgaaaaatttaagttatttcACTATCTCAATCGTCACAAAAGGCAACAACATCAGAAGGAAAATTTGACAGAAAATCTACAATCGTCTGAAAACAGTCAAGATTCACCATCGAAGAAGAAAACAAGAATAAGATATAAAGATTTAGATGAGAGCGACCGGACTTGCAaaatttgtgataaaaaatttgctAGACGTTATAGTCTGAAGCTTCATAATATGCGCGTGCACACATGGGAATTTAAATATCGCTGCGGAAAATGCTGTAAACAGTTTAAGATTGCTGAAGACCTCACCAGTCACATGAAGCGATCTCATCCAGGCTCAATCTCAATAGAAGCTAagcaaaattctagaaaaaggCAACtagaatctgaaaaaattcaacaagAATCTACAGAAGCTCAGCAAGAAACTACATCAGTTAAAGAAGAAGACGatcaagaaattgaaaaacactCCCTAGAAACTCAACTAGAATCTACAGATATTCAACAAGTATTTACAGAAGTTCAACAAGGAACTATAAAAGGTGAACAAGAAGAACAGAATTCATTAACTCCTTCATCTACTGTAATCGAAGATTCGactcaaaagaaaagaaaacaaatacATAAAAACTTACAGTTGCCTTGTACCATCTGTAATAAGAAATTTGGCAGAGTTTATGGTTTGAAGGTCCATCATATTCGTATGCACACAacggaatttaaatttagctGTGAACTGTGCGGTAAACCGTTTAAGCTTCTTAAAGATCTCCACAGACACCAAAAATGCTTTCATTCAAAAGAAAGTCCAGCAAGAACCCAACGAAATTCGAGAAAAGGACAACGAAAAGATCCAGTTCAACAGGTTGAAGAAGTGGAACAAGTGAAGAATTCGACAGAGACTCCTTCCTCTAttacaataaagaaaaatccTAGCAGAAAAGGATTATTTATTTGTGAAGTTTGTGGTAAGATCTGTACAcgcaaggaatctttacagTTGCATATAACTAGCAGGCACAGTGGCGAATTTAACTATACATGTGCAGACTGtggaaaagaatttaagacgCGGAAAGTTCTATGTGCACACTTAAAACGTGGtcatgaaaaacaaaaagttcCAGTTCAGAAGGATGCAGGTGagttttattgtaaaatttgcgGCATCAAAGTTTTGCGCAAAAGCACTCTCAAAATTCATCACCTTCGTAAGCATACGCatcagtttaaattttcttgtaaatgGTGTGGCAAAAACTTCAAAGTCCAAGGAGATCTTACAACTCATACGAGGCTTCGCCATCTAGAACCACCTGCGGTATGCGAGGTTTGCGGAAAGACatgcaaaaataaacattcTCTTTATGTCCACCAAAAATACAATCATTTCAAAACCAAATTCTTGTGTTCCGTTTGCAACAAATGTTTCGCTTCTCAAGAAAATCTCGATCAACACATGTTCAACCATGAAAAGAAGGACAGATTAACTTGTGCTGAATGCGGGAATACATTTGCGACTAAATTTACTCTTCAAAGTCATTTACGTTGTGTGCATCATGAAGAAAAGACGTTTTCTTGTCAGGTTTGTGGAAAATTGTTCCCTTCACAGTCTAGATTGAGAAAGCATCTACTAACTCATACAGGTAAACGACTTTTTGTGTGTGATATTTGTGGGAAACCATTTAAGCACAAACCTAGTTTAATTAGCCACAGAAAACTTCATCCTGGTGTGCATCCTCCGCTTCCTATTATTCGATTGGATGATGTTCTTAGTGAGTTCATCCAGAAATAG
- Protein Sequence
- MRPKGVPMKPRSRLQVRKDVFISLSSINFIDALKRDTIQEKATSSSPKTSSVRKKVIQTQKPASQPRSKVPRAPKTPKVPKAPKTKNKDLNQPPKRRRRKKGSDETSGENNSKEKVEFICSACGTVFAKKEILQAHFIRKHTEGYNFSCDTCGKQFKLKGDLVTHIRLHHLEPPTVCDVCGKTYKNSLSLYVHQKYAHYKARFECQTCKRCLVTQENLDHHIAVMHGQRPILVCEECGKTFNKRVNLRRHFNNVHTNNKAYVCPVCSKAFGQTYHLRQHLLLHTGKRIYRCECGKEFAQKPGLLSHRKSHPGEHPPLPIIRLDQVLKEFLNKKCARAKQRPTSLLRLQENLKQPLTTTQASKTRFNVVSTLVPTSKLFPALEKTVQDSNLSTQLMNVCQIPKKQLKMVSTLVPTSKLFPALEKTVQNSNLATQLTNVCQIPKKQLKMVSTLVPTSKLFPTYAVMNLSKFKDSSKVVINTTSEPVVESDPLALNNSGQSLYNGIHIGIESFFENTSESSTAGKTDSIVKRNQSLQNEVTPEITIKKPDPLSIENIGVVISGMFKCKACDKLFKRKEALKVHYIRLHSNIHRYSCDECGEKFKLFHYLNRHKRQQHQKENLTENLQSSENSQDSPSKKKTRIRYKDLDESDRTCKICDKKFARRYSLKLHNMRVHTWEFKYRCGKCCKQFKIAEDLTSHMKRSHPGSISIEAKQNSRKRQLESEKIQQESTEAQQETTSVKEEDDQEIEKHSLETQLESTDIQQVFTEVQQGTIKGEQEEQNSLTPSSTVIEDSTQKKRKQIHKNLQLPCTICNKKFGRVYGLKVHHIRMHTTEFKFSCELCGKPFKLLKDLHRHQKCFHSKESPARTQRNSRKGQRKDPVQQVEEVEQVKNSTETPSSITIKKNPSRKGLFICEVCGKICTRKESLQLHITSRHSGEFNYTCADCGKEFKTRKVLCAHLKRGHEKQKVPVQKDAGEFYCKICGIKVLRKSTLKIHHLRKHTHQFKFSCKWCGKNFKVQGDLTTHTRLRHLEPPAVCEVCGKTCKNKHSLYVHQKYNHFKTKFLCSVCNKCFASQENLDQHMFNHEKKDRLTCAECGNTFATKFTLQSHLRCVHHEEKTFSCQVCGKLFPSQSRLRKHLLTHTGKRLFVCDICGKPFKHKPSLISHRKLHPGVHPPLPIIRLDDVLSEFIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394549; iTF_01390515;
- 90% Identity
- iTF_01394549;
- 80% Identity
- -