Sumb019279.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01018598.1:228319-232873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.08 9.2 7.5 0.2 1 23 118 141 118 141 0.93 2 22 1.4e-05 0.0017 19.3 1.6 1 23 147 169 147 170 0.95 3 22 9.8e-05 0.011 16.6 0.3 2 23 176 198 175 198 0.95 4 22 0.0018 0.2 12.7 2.2 1 23 203 226 203 226 0.96 5 22 4.4e-06 0.0005 20.9 0.7 2 23 233 255 232 255 0.93 6 22 1.9e-05 0.0021 18.9 0.8 1 23 261 283 261 283 0.97 7 22 0.0054 0.62 11.2 0.3 5 23 292 310 290 310 0.97 8 22 9.5e-05 0.011 16.7 1.3 1 23 562 585 562 585 0.97 9 22 0.00041 0.047 14.7 3.6 1 23 591 614 591 614 0.97 10 22 7.5e-06 0.00086 20.2 1.6 2 23 651 673 651 673 0.96 11 22 0.016 1.8 9.7 2.6 1 23 679 702 679 702 0.96 12 22 0.0003 0.035 15.1 1.1 2 23 793 815 792 815 0.95 13 22 0.012 1.4 10.0 5.4 1 21 821 841 821 844 0.95 14 22 2.9e-05 0.0033 18.3 1.2 1 23 894 917 894 917 0.96 15 22 1.3e-05 0.0015 19.4 1.7 1 23 923 946 923 946 0.98 16 22 0.02 2.3 9.4 2.6 1 23 960 983 960 983 0.72 17 22 7.6e-06 0.00087 20.2 1.1 1 23 989 1012 989 1012 0.96 18 22 0.00032 0.036 15.0 4.4 2 23 1018 1040 1018 1040 0.95 19 22 5.8e-05 0.0067 17.4 2.5 1 23 1045 1067 1045 1067 0.94 20 22 0.00055 0.063 14.3 2.1 2 21 1074 1093 1073 1096 0.94 21 22 6.7e-06 0.00077 20.3 0.9 1 23 1102 1124 1102 1124 0.98 22 22 5.7e-07 6.6e-05 23.7 0.6 1 23 1130 1152 1130 1152 0.98
Sequence Information
- Coding Sequence
- ATGCGACCAAAAGGGGTTCCTATGAAGCCAAGATCTAGATTGCAAGTAAGAAAGGATGTTTTCATATCATTGTCGAGTATTAATTTCATAGATGCCCTAAAGAGAGACACCATCCAAGAGAAAGTAACTTCCTCGTCACCTAAAACTTCTTCTGTACGAAAAAAAGTTGTCCAGACGGAGAAACCAGCTTCAAAACCAAGATCCAAAGTACCAAGAGCACCAAAAACACCGAAAGTACCAAAAGCACCTAAAACTAAAAACAAAGACTTAAATCAACCGCCGAAGCAAAGAAGAAGGAAGAAAGGATCTGATGAGACACCTGGAGAAAACAATTCTAAAGAGAAAGTTGAATTCATTTGCTCAGCTTGTGGAACAGTATTTGCGAAAAAAGAAATACTTCAGGCTCATTTCATAAGAAAACACACTGAAGGGTACAATTTTTCTTGTGACACATGTGGTAAACAGTTTAAACTCAAAGGTGACCTTGTAACTCACATTCGACTACATCACTTAGAACCACCTACAGTCTGCGATGTATGTGGTAAAACTTACAAAAACAGTCTTTCTCTCTATGTTCACCAGAAATATGCTCACTATAAAGCAAGATTTGAGTGCCAGACTTGCAAGCGATGTTTGGTTACTCAAGAAAATCTTGATCATCACATTGCAGTAATGCACGGACAAAGACCCATTTTGGTTTGCGAGGAATGCGGAAAAACGTTTAATAAAAGAGTCAATCTTCGAAGACATTTTAACAATGTTCATACTAATAATAAAGCATACGTTTGCCCAGTTTGTAGTAAAGCTTTTGGTCAAACGTATCATTTGAGACAACATCTGCTTCTACACACGGGTAAGCGTATATATCGTTGTGAATGTGGAAAAGAATTTGCACAAAAACCGGGACTTTTGAGTCACAGAAAAAGTCATCCTGGTGAACATCCTCCTTTACCGATAATTCGATTAGATCAAgttcttaaagaatttttgaacaaGAAATGTGCCAGAGCAAAGCAAAGGCCAACATCTCTTCTCAGACTCCAGGAAAATCTCAAACTGCCTCTCACAACCACTCAAGCGtctaaaactaaatttaacgTGGTTTCTACTATAGTTCCAACATCGAAGCTGTTTCCAGCACTAGAGAAAACAGTTCAAAACTCAAATTTGTCAACACAATTAACGAATGTTTGTCAGATAcctaaaaaacaattaaaaatggtttCTACTTTAGTTCCAACATCGAAGCTGTTTCCAACACTAGAAAATACAGTTCAAAACACAAATTTGGCAACACAATTAACGAATATTTCTCAGatacctaaaaaaaaattaaagattgttCGTACTTTTGTTCCGACATCAAAGATGTTCCCAACTTATGCAGTTATGAATCTTAGTGAACTTAAAGATTCTTCAAAAGAGGTAATAAGCACTACGAGTGAACCTGTTGCAGAACCGGATCCACTCGCACTCAATAATTCAGAACAATCTCTTTATAATGGAATGCATATTGGAATAGAATCATTCCTCGAAAATACTTCTGAGTCTTCTACAGCTGGTAAAACTGATATCATCGTTAAAAGAAATCAATCTCTGCAAAAAGAAGTGACATCAGAAATAACGATTAAAAAACCCGACCCTCTCTCTATTGAAAATATAGGCGTAGTGACATCAGATATGTTCAAGTGTAAAGCTTGcgataaattattcaaacgcAAGGAGGCCTTGAAGGTTCATTACATTCGTTTACACTCAAATATTCATCGTTATTCCTGCGATGAGTGTGgtgaaaaatttaagttatttcaCTATCTCAATCGTCACAAAAGGCAAGAACATCAGAAGGAAAATTTGACAGAAAGTCTACAATCGTCTGAAAACAGTCCAGATTCACCatcgaaaaagaaaacaagaaTAAGATATAAGGATTTAGATGAGAGCGACCGGACTTGCAAAATTTGTGATAAAAAGTTCGCCAGACGTTATAGTCTGAAGCTTCATTATATGCGCGTGCACACAtgggaatttaaatatgattgcGGGAAATGCTGTAAACAGTTTAAGATTGCTGAAGACCTGACCAATCACATGAAGCGATCTCATCCAGGCTCAATCTCAATAGAAGCTAAACGAAATTCTAGAAAAGGGCAACAAGAATCTACAGAAGCTCAGCAAGAAACTACAACAGTTAAAGAAGAAGACGatcaagaaattgaaaaacacTCCCTAGAAACTCAACTAGAATCTACAAATAATCAACAAGAAACTATAAAAGGTGAACACAAAGAACAGAATTCAGTAACTCCTTTATCTACTGTAATCGAAGATTCGCctcaaaagaaaagaaaacgaaTACATAAAAACTTAGAGTTGACTTGTAACATCTGTGATAAGAAATTTGGCAGAGTTTATGGTTTGAAGGTCCATCATATTCGTATGCACACAacggaatttaaatttagctGTGAACTGTGCGATAAACCGTTTAAGCTTCTTAAAGATCTCCACAGACACCAAAAATGCTTTCATTCAAAAGAAAGTCCAGCAAGAACCCAACGAAATTCGAGAAAAGGACAACGAAAAGATCCAGTTCAACAGGTTGAAGAAGTGGAACAGAATTCGACAGAGACTCCTTCCTCTATTACAATAAAACAAAGTCCTAGCAGAAAAGGATTATTTATTTGTGAAGTTTGTGGTAAGATCTGTAcacgcaaggaatctttacAGTTGCATATAACTAGCAGGCACCGTGGCGAATTTAACTATACATGTGCAGACTgtggaaaagaatttaagaccCGGAAAGTTCTATGTGCACACTTAAAACGTGGTCATGAAACACAAAAAGTTCCAGTTCAGAAGGATGCAGGTGagttttattgtaaaatttgcgGCATCAAAGTTTTGCGCAGAAGCACTCTCAAAATCCACCACCTTCGTAAGCATACGCAtcagtttaaattttcttgtaaatgGTGTGGCAAAAACTTCAAAGTCCAAGGAGATCTTACAACTCATACGAGGCTTCGCCATCTAGAACCACCTGCGGTATGCGAAGTTTGCGGAAAGACatgcaaaaataaacattCTCTTTATGTCCACCAAAAATACAATCATTTCAAAACCAAATTCTTGTGTTCCGTTTGCAACAAATGCTTCGCTTCTCAAGAAAATCTCGATCAACACATGTTCAACCATGAAAAGAAGGACAGATTAACTTGTAATGAATGCGGGAATACATTTGCGACTAAATTTACTCTTCAAAGTCATTTACGTTGTGTTCATCATGAAGAAAAGACGTTTTCTTGTCAGGTTTGTGGAAAATTGTTCCCTTCACAGTCTAGATTGAGAAAGCATCTACTAACTCATACAGGTAAACGACTTTTTGTTTGTGATATTTGTGGGAAAACATTTAAGCAAAAACCTAGTTTAATTAGCCACAGAAAACTTCATCCTGGTGTGCATCCTCCGCTTCCTATTATTCGATTGGATGATGTTCTTAGTGAGTTCATCCAGAAAtag
- Protein Sequence
- MRPKGVPMKPRSRLQVRKDVFISLSSINFIDALKRDTIQEKVTSSSPKTSSVRKKVVQTEKPASKPRSKVPRAPKTPKVPKAPKTKNKDLNQPPKQRRRKKGSDETPGENNSKEKVEFICSACGTVFAKKEILQAHFIRKHTEGYNFSCDTCGKQFKLKGDLVTHIRLHHLEPPTVCDVCGKTYKNSLSLYVHQKYAHYKARFECQTCKRCLVTQENLDHHIAVMHGQRPILVCEECGKTFNKRVNLRRHFNNVHTNNKAYVCPVCSKAFGQTYHLRQHLLLHTGKRIYRCECGKEFAQKPGLLSHRKSHPGEHPPLPIIRLDQVLKEFLNKKCARAKQRPTSLLRLQENLKLPLTTTQASKTKFNVVSTIVPTSKLFPALEKTVQNSNLSTQLTNVCQIPKKQLKMVSTLVPTSKLFPTLENTVQNTNLATQLTNISQIPKKKLKIVRTFVPTSKMFPTYAVMNLSELKDSSKEVISTTSEPVAEPDPLALNNSEQSLYNGMHIGIESFLENTSESSTAGKTDIIVKRNQSLQKEVTSEITIKKPDPLSIENIGVVTSDMFKCKACDKLFKRKEALKVHYIRLHSNIHRYSCDECGEKFKLFHYLNRHKRQEHQKENLTESLQSSENSPDSPSKKKTRIRYKDLDESDRTCKICDKKFARRYSLKLHYMRVHTWEFKYDCGKCCKQFKIAEDLTNHMKRSHPGSISIEAKRNSRKGQQESTEAQQETTTVKEEDDQEIEKHSLETQLESTNNQQETIKGEHKEQNSVTPLSTVIEDSPQKKRKRIHKNLELTCNICDKKFGRVYGLKVHHIRMHTTEFKFSCELCDKPFKLLKDLHRHQKCFHSKESPARTQRNSRKGQRKDPVQQVEEVEQNSTETPSSITIKQSPSRKGLFICEVCGKICTRKESLQLHITSRHRGEFNYTCADCGKEFKTRKVLCAHLKRGHETQKVPVQKDAGEFYCKICGIKVLRRSTLKIHHLRKHTHQFKFSCKWCGKNFKVQGDLTTHTRLRHLEPPAVCEVCGKTCKNKHSLYVHQKYNHFKTKFLCSVCNKCFASQENLDQHMFNHEKKDRLTCNECGNTFATKFTLQSHLRCVHHEEKTFSCQVCGKLFPSQSRLRKHLLTHTGKRLFVCDICGKTFKQKPSLISHRKLHPGVHPPLPIIRLDDVLSEFIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392195;
- 90% Identity
- iTF_01392195;
- 80% Identity
- -