Sgif020807.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000046.1:4093457-4098167[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0068 0.94 10.9 0.2 1 23 122 145 122 145 0.93 2 22 1.4e-05 0.002 19.3 1.6 1 23 151 173 151 174 0.95 3 22 9.6e-05 0.013 16.7 0.3 2 23 180 202 179 202 0.95 4 22 0.0017 0.24 12.7 2.2 1 23 207 230 207 230 0.96 5 22 4.3e-06 0.00059 20.9 0.7 2 23 237 259 236 259 0.93 6 22 3.3e-05 0.0046 18.1 0.8 1 23 265 287 265 287 0.97 7 22 0.0053 0.74 11.2 0.3 5 23 296 314 294 314 0.97 8 22 0.00011 0.015 16.5 1.3 1 23 526 549 526 549 0.97 9 22 0.00073 0.1 13.9 4.4 1 23 555 578 555 578 0.97 10 22 3.2e-05 0.0044 18.2 1.5 2 23 615 637 615 637 0.95 11 22 0.011 1.5 10.2 3.3 1 23 643 666 643 666 0.98 12 22 0.0016 0.22 12.8 2.2 2 23 750 772 749 772 0.94 13 22 0.0032 0.45 11.9 5.2 1 21 778 798 778 801 0.95 14 22 3e-05 0.0041 18.3 1.3 1 23 851 874 851 874 0.96 15 22 6.5e-06 0.00091 20.3 1.6 1 23 880 903 880 903 0.98 16 22 0.02 2.7 9.4 2.6 1 23 917 940 917 940 0.72 17 22 7.4e-06 0.001 20.2 1.1 1 23 946 969 946 969 0.96 18 22 0.00015 0.021 16.0 3.7 2 23 975 997 974 997 0.95 19 22 5.7e-05 0.0079 17.4 2.5 1 23 1002 1024 1002 1024 0.94 20 22 0.0016 0.22 12.9 1.5 2 21 1031 1050 1030 1053 0.94 21 22 6.5e-06 0.0009 20.3 0.9 1 23 1059 1081 1059 1081 0.98 22 22 2.2e-06 0.00031 21.8 1.0 1 23 1087 1109 1087 1109 0.98
Sequence Information
- Coding Sequence
- ATGCGACCAAAAGGGGTTCCTATGAAGCCAAGATCTAGATTGCAAGTAAGAAAGGATGTTTTCATATCATTGTCGAGTATTAACTTCATAGATGCCCTAAAGAGAGACACCATCCAAGAGAAAGCAACTTCCTCATCACCTAAAACTTCTTCTGTTCGAAAAAAAGTTGTCCAGACGGAGAAACAAGCTTCAAAACCAAGATCCAAAGTACCAAGAGCACCAAAAAAACCGAAAGTACCAAAAGCACCTAAAACTAAAAACAAAGACTTAAATCAACCGCCGAAGCAAAGAAGAAAGAAGAAAGCATCTAATGAGACATCTGGAGAAAACAATTCAGAAAATACTGCTAAAGAGAAGGTTGAATTCATTTGCTCAGTCTGTGGAACAGTATTTGCGAAAAAAGAAATACTTCAGGCTCATTTTATAAGAAAACACACTGAAGGGTACAATTTTTCTTGTGACACATGTGGTAAACAGTTTAAACTCAAAGGTGACCTTGTAACTCACATACGACTACATCACTTAGAACCACCTACAGTCTGCGATGTATGTGGTAAAACTTACAAAAACAGTCTTTCTCTCTATGTTCATCAGAAATACGCTCACTATAAAGCAAGATTTGAGTGCCAGACTTGTAAGCGATGTTTGGTTACTCAAGAAAATCTTGATCATCACATTGCAGTAATGCACGGACAAAGACCCATTTTGGTTTGTGAGGAATGCGGAAAAACGTTTAATAAAAGAGTCAATCTTCGAAGACATTTTAACAATGTTCATACTAATAATAAAGCATACATTTGCCCAGTTTGTAGTAAAGCTTTTGGTCAAACGTATCATTTGAGACAACATCTGCTTCTACACACAGGTAAACGTATATACCGTTGTGAATGTGGAAAAGAATTTGCACAAAAACCGGGACTTTTGAGTCACAGAAAAAGTCATCCTGGTGAACATCCTCCTTTACCGATAATTCGATTAGATCAAGTTCTTAAGGAATTTTTGAACAAGAAATGTCCAAGAGCAAAGCAAAGGCCAACATCTCTTCTCAGACTGCAGGAAAATCTCGAACAGCCTCTCAGAACCACTCAAGCGTCTAAAACTAGATATAACGTCGTTTCTACTTTAGTTCCAACGTCGAAGCTGTTTCCAACACTAGAAAATACAATCCAATACTCAAATTTGGCAAAACAATCAACGAATGTTTCTCAGACACCTAAAAAAAAATTAAAGATTGTTCGTACTTTTGTTCCGACATCAAAGATGTTCCCAACTTATGCAGTTATGAATCTTAGTGAATTCAAAGATTCTTCAAAAGTGGTAATAAGCACTACGAGTGAAACTGTTGAGGAATCGGATCCACTCTCACTCAATAATTCGGAACAACCTCTTTATAATGGAATTCATATTGGAATAGAATCATTCTTCGAAAATACTTCTGAGTCTTCTACAACTGGTAAAACTCATAGCCTCGTTGAAAGAAATCAATCTCTGCAAAACGAAGTGACAACAGAAATGACGATTAAAAAACCCGACCCTCTCTCTATTGAAAATATAGGCGTAGTGACATCAGGTATGTTTAAGTGTAAAGCTTGCGATAAATTATTCAAACGCAAGGAGGCCTTGAAGATTCATTACATTCGTTTACACTCAAATATTCATCGTTATTCCTGCGAAGAATGTGGTGAAAAATTTAAGTTATTTCACTATCTCAATCGTCACAAAAGGCAATATCATCAGAAAAAAAATTTGACAGAAAGTCTACAATCTTCTGAAAACAGTCAAGATTCACGATCGAAAAAAAAAACAAGAATAAGATATAAGGATTTAGATGAGAGCGACCGGACTTGCAAAATTTGTGATAAAAGGTTCGCCAGACGTTATAGTCTGAAGCTTCATAATATGCGTGTACACACATGGGAATATAAATATCGCTGTGGAAAATGCTGTAAACAGTTTAAGATTGCTGAAGACCTCACCAGTCACATGAAGCGATCTCACCCAGGCTCAATCTCAATAGAAGCTAAACGAAATTGTGGAAAAAGGCAACTAGAATCTGAAAAAATTAAGCAAGAGTCTACAGAAGCTCAGCAAGAAACTACAAAAGTTAAAGAAGAAGACGATCAAGAAATTGAAAAACACTCACTAGAAACTCAACAAAAAGAACATAATTCAGCAACTTCTTCATCTACTGTAATCGAAGATTCACCTCCAAAGAAAAGAAAACAAATACATAAAAACTTACAGTTGCCTTGTACCATCTGTCATAAGAAATTTGGCAGAGTTTATGGTTTGAAGGTCCATCATATTCGTATGCACACAACGGAATTTAAATTTACCTGTGAACTCTGCGGTAAACCGTTTAAGCTTCTTAAAGATCTCCACAGACACCAAAAGTGCTTTCATTCAGAAGAAATTCCAGCAAGAACCCAACGAAATTCGGGAAAAGGGCAACAAAAAGATCCAGTTCAACAGGTTGAAGAAGTGGAACAGTATTCGACAGAGACTCCTTCCTCTATTACAATAAAGCAAAGTCCTAACAGAAAAGGATTATTTATTTGTGAAGTTTGTGGTAAGATCTGTACACGCAAGGAATCTTTACAGTTGCATATAACTAGTAAACACAGTGGAGAATTTAACTATAGATGTGCAGACTGTGGAAAAGAATTTAAGACCCGGAAAGTTCTATGTGCACACATAAAACGTGGTCATGAAAAACAAAAAGTTCCAGTTCAGAAGGATGCAGGTGAGTTTTATTGTAAAATTTGCGGCATCAAAGTTTTGCGCAGAAGCACTCTCAAAATCCATCATCTTCGTAAACATACGCATCAGTTTAAATTTTCTTGTAAATGGTGTGGCAAAAACTTCAAAGTCCAAGGAGATCTTACAACTCATACGAGGCTTCGTCATCTAGAACCACCTGTGGTATGCGAGGTTTGCGGAAAGACATGCAAAAATAAACATTCTCTTTATGTCCACCAAAAATACAATCATTTCAAAACCAAATTCTTGTGTTCCGTTTGCAACAAATGCTTCGCTTCTCAAGAAAATCTCGATCAACACATGTTCAACCATGAAAAGAAGGACAGATTAACTTGTGCTGAATGCGGGAATACATTTGCGACTAAATTTACTCTTCAAAGTCATTTACGTTGTGTACATCATGAAGAAAAGACGTTTTCTTGTCAGGTTTGTGGGAAATTGTTCCCTTCACAGTCTAGATTGAGAAAGCATCTACTAACTCATACAGGTAAACGACTTTTTGTGTGTGATATTTGTGGGAAACCATTTAAGCACAAACCTAGTTTAATTAGCCACAGAAAACTGCATCCTGGTGAGCATCCTCCGCTTCCTATTATTCGATTGGATGATGTTCTTAGTCGTCTCTTGGAATTTGAATCAACATTGATTATAAGTGTTGATTATAAAGGTTTTCCAGTTCTAGAAGTAAACAAACTTAGTCAACTAAACCTACCTCTTTGA
- Protein Sequence
- MRPKGVPMKPRSRLQVRKDVFISLSSINFIDALKRDTIQEKATSSSPKTSSVRKKVVQTEKQASKPRSKVPRAPKKPKVPKAPKTKNKDLNQPPKQRRKKKASNETSGENNSENTAKEKVEFICSVCGTVFAKKEILQAHFIRKHTEGYNFSCDTCGKQFKLKGDLVTHIRLHHLEPPTVCDVCGKTYKNSLSLYVHQKYAHYKARFECQTCKRCLVTQENLDHHIAVMHGQRPILVCEECGKTFNKRVNLRRHFNNVHTNNKAYICPVCSKAFGQTYHLRQHLLLHTGKRIYRCECGKEFAQKPGLLSHRKSHPGEHPPLPIIRLDQVLKEFLNKKCPRAKQRPTSLLRLQENLEQPLRTTQASKTRYNVVSTLVPTSKLFPTLENTIQYSNLAKQSTNVSQTPKKKLKIVRTFVPTSKMFPTYAVMNLSEFKDSSKVVISTTSETVEESDPLSLNNSEQPLYNGIHIGIESFFENTSESSTTGKTHSLVERNQSLQNEVTTEMTIKKPDPLSIENIGVVTSGMFKCKACDKLFKRKEALKIHYIRLHSNIHRYSCEECGEKFKLFHYLNRHKRQYHQKKNLTESLQSSENSQDSRSKKKTRIRYKDLDESDRTCKICDKRFARRYSLKLHNMRVHTWEYKYRCGKCCKQFKIAEDLTSHMKRSHPGSISIEAKRNCGKRQLESEKIKQESTEAQQETTKVKEEDDQEIEKHSLETQQKEHNSATSSSTVIEDSPPKKRKQIHKNLQLPCTICHKKFGRVYGLKVHHIRMHTTEFKFTCELCGKPFKLLKDLHRHQKCFHSEEIPARTQRNSGKGQQKDPVQQVEEVEQYSTETPSSITIKQSPNRKGLFICEVCGKICTRKESLQLHITSKHSGEFNYRCADCGKEFKTRKVLCAHIKRGHEKQKVPVQKDAGEFYCKICGIKVLRRSTLKIHHLRKHTHQFKFSCKWCGKNFKVQGDLTTHTRLRHLEPPVVCEVCGKTCKNKHSLYVHQKYNHFKTKFLCSVCNKCFASQENLDQHMFNHEKKDRLTCAECGNTFATKFTLQSHLRCVHHEEKTFSCQVCGKLFPSQSRLRKHLLTHTGKRLFVCDICGKPFKHKPSLISHRKLHPGEHPPLPIIRLDDVLSRLLEFESTLIISVDYKGFPVLEVNKLSQLNLPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392195;
- 90% Identity
- -
- 80% Identity
- -