Basic Information

Insect: Synergus itoensis
Gene Symbol: MBD-R2
Assembly: GCA_904066005.1
Location: CAJFCP010000106.1:859282-862848[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2e-15 1.6e-11 44.4 0.1 6 69 398 461 393 469 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2e-15	1.6e-11	44.4	0.1	6	69	398	461	393	469	0.91

Sequence Information

Coding Sequence: ATGTCAATGAAATCTCCCACATCTTATTCTCAAGAAGACTTGGACTTGATAAATTCAGAAATCCCCAGTTTCGTTTTTTCCATCCCCACTACTTCTTCTGATCAAGCCCAAAAATCTTCTACAAATACTGACACACATTTCCCCAATGTAGAAGAATTCCAAAATAATTTAAATACTTTAAATATCGACGATTTGCAAAATGCTTGCAGCCTCGAGTTAAACAAAGAAGTATCCACAGCAGAGAAAAACGAGTTCATCCAAAATGAAAATGTGGCAATTCCAGACCAAGCTGTTCAAGAAATTGCCAATCTCCCCGTGATTGTAGATGACGCTACAAAAAACTTTCATCAAGGAATCGAGAACATCAGATTGCAGAGTGAGAGGAAAATCGAAAAAGAAAACGAGCTGAAAACCAAATCCGTGAATCGAAGGGGTTTAAACTTTTTTCCAGGTGACAAACTTGAAGCAAAGGATTTTAATGAAAAATGGTATTCAGCCCGAGTAGTTGAGACCGACTGGGTTGAACGGGAAGTCTTGATTCATTTCGATAAATGGAGTTCCAGATTTGACGAGTGGATTCCTATGGACAGCCCTCGTTTGCGAGTTTTACAGGTTCAATCGCGTGAAATGAAAACGAGGGATTTCGTAGCGGGGGAGAGAATTCTAGCTACCTGGGCAGACGGTAGAAAGTATCCAGCGAAAGTAAACGCTGTCTTAGGAAATGACAGGTACGACGTTCATTTCGACGATGGATACGTAAAAATCATCAGATCCTCCAAAATGACGAAGATTGGAGGACCTTTGGAAGAGGAGATTGATGGCGAAGACATCATTGGAAGCAAGGAGAAACGAAAAGACAGAAATCGAAAGTACCAAGTGATGGACCTCTTTCAAAGGAAATCAAAGAAACTGAATCCGGATAAACATCCCAGGAAGGGTCGACCTAGCAAAGAGGGACCTAGTGAACCATTACTAGTCGAGAGTGAATCTCCATCGGGATCTCACGATGATTCTGGCACCGAGGTTCTGCACGGATTTGATAATTCAACTCCGAAGGTTAAGACGTATTTAAAGAAAGACAAAAAGGAGAAAACCGACACTGAGCTCGAAGAGAGCGTTAGACCTGAATGGATAGATGGAGAACCTCAGGGAATAGAATCCTACATCGAAGGACCTCGTCGTTCCATAATTGTAGCTGATAAACGCTTGCCACCAGGTTGGCAGAAGCACTTTACTCAGCGGAAGGCGGGATCATCTGCGGGAAAATGGGACGTGCTTTTTATACACCAATCAAGTGACAAAAAATTCAGATCTAGAAATGATATCAGAAGCTATATGGCGACTCAAGGTATGTTGGACTTCGATCCGGAGAAATTTGACTTCTGCATCCATCGAAAGAAAAAGACCAAGCCAGAGAAACCAAAGAGCGAAGCTGATCCTGTTAAAAAACCAAAATCTCATTCGAAAGCGAAACATACTCTTGTTCCTGAATATTCTCCGGTTCCTGGTTTCAGTACTCCGACTTCTTCAATGACACCATCTTCGTCAGTGGATGATGGAGCAGTTTTCATCGGAGACCTGCGGATAGAAATGGAGGACAGTTCTTACAAGTGTCCTAAAGAGGGCTGCTTAAAGAACTTTCGGAAGGAAAATCTCCTGCAAATGCATATAAAACACTATCACCCTGAGTACTCGAAATTCCTGGGTTCAACACCTAATGTTGCAGACTTAGCGTATGCGAGAACCATTGGAGAATCGATCGGTGATATCATCCCGAAGCAGACCTCTAACTTCATGGAGAAGATAAACAAATTTGAGAGGAGAAAAGGGTCACATGATAAGTCTCAGTTGCCGGTTTTGCACTCGGCACTCTCGCCTTCCCAATTGTTGTCGACTTCAATGCCATCTCCAACGCCTCCGGTGTTGGAAGTCGAAGTCGGTCGACCTGAGGATTTGAACAATTTCCAGCGGGAAGAAAAACACGAACTGGGATCTCCAGTCAGAGGTAATAACGAGAATGCTAGGCAAGATAACGACTGTGCTATGTCCCCTGGAACCCTTTTCGACCTGAAACTTCGCGAGGAGAAGACACAGACTGGTATCAAAACTCTTCTGCCAGTTAGATCAGCAGTATCAGAACGGTTTGATAAATCTAAGCCTCTGGAAGAGGCCGCTCGGAAAGAGAGAGGACGGAGCCAGAGAAAACGACATATTTCAGATTATCAGCCAGATGTGGTTGGCAGATCGAAAAAGAAAAATATTGCACAAGATCTGTCAGAGAGCATTGATGATACACCTTTAAATACTACAGATCCAGAAGGCCGTCCGACAACGTATCGTTTCAGTCGGAGGAAACTGGTGGGCTCGAAACACAACGGCATCGCTAAGAATAAGAATGGAGAGATGACTATGTTGGTAAACGGTGAGGTGATTAAAGTAGAGCAGCTTCGAAAGGAAGAGATCATCAACTGCACTTGCAAGGTGGTAGAAGAGGACGGTTTGATGATACAGTGCGATCTTTGTCTTTGCTGGCAGCACGGACACTGTAACGCGATTGAAAAGGAAAAAGATGTCCCTGATAAATACGTTTGTTATATTTGTCGACATCCTTACCGACAACGACCGTCGAAAAAATATATCCATGACCAGGAGTGGATGAAGACAGGTAAACTGCCAAGTCTCCCTGACCGGACCAAAAACGAACTCACGATAAAGCAAAGAACAGCAATGCTGAAACGCTCCTGCGATTTAGTGAGTTCCTTACTTCAGATTCAAACTCTACTTCACAGCTTACGAGTCAAGATTAATGTCGCTCAGAAGAAAGACCATCCTAAGTTGTATCTTTGGGCGAAAAATTGGGAGAAATTTGTGATTCCAAAGCCTGATATTACACCAGTTCCTGTTCTTGAAGTTTCTGAAGAAGTTGATGAACCGGATATTAAATTGGATAAGGAAGAAACTAAGTTGGAGGATCAAAGTATCAAGGAAGATCCGGATGATAAATCAATAGCGACGGATTCTGAATTGGTGAAGATTCTAGAGGAGGATGGAACACATTCTGATGAGTCGAAGGTTGTAAACAAAGTAGAAAATTCTGCGAGTCAAAATGATCATTTTTTGCTGGATGCCTTGACAAAGAGCAGTAGTCTGGAAGAAAATTTGAAAACAGAGACTTCTAATGACATTTTAGATAGCCAAGATGCCAAGAAAAGTACAAATGTTGAAACGAAATCGGGCGTTTTGTCTGAAAATGGCATTTCGACTCAAGCAGCGTTTTCCTCGCCTCAGACTAAACGTTCTGCTGCTCTACCTTCGCTACCATTTATTCCGGAACCGGAAGCTCCAATAGATCCTACAGAATGCAGAATGAGACTGCTGGAACATATTGATCATTATGAAAGTTATGTTTCTTCAACATTAACATCTATTGAAGCCCAAGTTCAGGTTTTGGAAGAAATGGACCCTGATTTAACGCCAGAATCAGATATTCATCCTCGGACTAAGCAAACTGTGCAAATGTTGCTTAGAGATTTGAGTACAATCAGGAAACTTGCAGCGATTTGTTAA
Protein Sequence: MSMKSPTSYSQEDLDLINSEIPSFVFSIPTTSSDQAQKSSTNTDTHFPNVEEFQNNLNTLNIDDLQNACSLELNKEVSTAEKNEFIQNENVAIPDQAVQEIANLPVIVDDATKNFHQGIENIRLQSERKIEKENELKTKSVNRRGLNFFPGDKLEAKDFNEKWYSARVVETDWVEREVLIHFDKWSSRFDEWIPMDSPRLRVLQVQSREMKTRDFVAGERILATWADGRKYPAKVNAVLGNDRYDVHFDDGYVKIIRSSKMTKIGGPLEEEIDGEDIIGSKEKRKDRNRKYQVMDLFQRKSKKLNPDKHPRKGRPSKEGPSEPLLVESESPSGSHDDSGTEVLHGFDNSTPKVKTYLKKDKKEKTDTELEESVRPEWIDGEPQGIESYIEGPRRSIIVADKRLPPGWQKHFTQRKAGSSAGKWDVLFIHQSSDKKFRSRNDIRSYMATQGMLDFDPEKFDFCIHRKKKTKPEKPKSEADPVKKPKSHSKAKHTLVPEYSPVPGFSTPTSSMTPSSSVDDGAVFIGDLRIEMEDSSYKCPKEGCLKNFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIGDIIPKQTSNFMEKINKFERRKGSHDKSQLPVLHSALSPSQLLSTSMPSPTPPVLEVEVGRPEDLNNFQREEKHELGSPVRGNNENARQDNDCAMSPGTLFDLKLREEKTQTGIKTLLPVRSAVSERFDKSKPLEEAARKERGRSQRKRHISDYQPDVVGRSKKKNIAQDLSESIDDTPLNTTDPEGRPTTYRFSRRKLVGSKHNGIAKNKNGEMTMLVNGEVIKVEQLRKEEIINCTCKVVEEDGLMIQCDLCLCWQHGHCNAIEKEKDVPDKYVCYICRHPYRQRPSKKYIHDQEWMKTGKLPSLPDRTKNELTIKQRTAMLKRSCDLVSSLLQIQTLLHSLRVKINVAQKKDHPKLYLWAKNWEKFVIPKPDITPVPVLEVSEEVDEPDIKLDKEETKLEDQSIKEDPDDKSIATDSELVKILEEDGTHSDESKVVNKVENSASQNDHFLLDALTKSSSLEENLKTETSNDILDSQDAKKSTNVETKSGVLSENGISTQAAFSSPQTKRSAALPSLPFIPEPEAPIDPTECRMRLLEHIDHYESYVSSTLTSIEAQVQVLEEMDPDLTPESDIHPRTKQTVQMLLRDLSTIRKLAAIC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01390215;
90% Identity: iTF_01394300;
80% Identity: -