Stip003650.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4451666-4455562[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.76 2.7e+03 -1.2 0.1 26 45 143 162 138 168 0.83 2 23 0.12 4.3e+02 1.4 0.0 22 45 192 215 181 221 0.87 3 23 0.038 1.4e+02 3.0 0.1 26 48 266 288 262 293 0.87 4 23 0.0059 21 5.6 0.0 24 48 295 319 291 323 0.90 5 23 0.011 39 4.7 0.1 24 45 324 345 319 352 0.85 6 23 0.0071 26 5.3 0.2 24 48 353 377 346 379 0.86 7 23 0.33 1.2e+03 -0.0 0.1 23 47 381 405 374 412 0.83 8 23 0.11 3.9e+02 1.5 0.1 21 48 407 435 404 439 0.83 9 23 0.012 42 4.6 0.1 24 48 440 464 429 470 0.80 10 23 0.17 6e+02 0.9 0.0 26 49 470 493 466 498 0.87 11 23 0.13 4.7e+02 1.3 0.1 24 48 497 521 492 524 0.89 12 23 0.043 1.6e+02 2.8 0.0 26 48 528 550 522 555 0.87 13 23 0.0043 15 6.0 0.0 24 48 555 579 547 585 0.83 14 23 0.037 1.3e+02 3.0 0.0 26 49 585 608 581 612 0.87 15 23 0.0089 32 5.0 0.1 24 45 612 633 609 640 0.87 16 23 0.024 88 3.6 0.0 24 48 641 665 634 669 0.86 17 23 0.0095 34 4.9 0.1 24 45 670 691 662 698 0.81 18 23 0.037 1.3e+02 3.0 0.0 24 45 699 720 692 727 0.84 19 23 0.036 1.3e+02 3.1 0.0 24 46 728 750 722 757 0.84 20 23 0.026 92 3.5 0.0 24 48 757 781 751 784 0.86 21 23 1.1 4e+03 -1.7 0.0 26 44 788 808 781 818 0.75 22 23 0.048 1.8e+02 2.6 0.0 26 48 818 840 810 846 0.88 23 23 1.5 5.4e+03 -2.1 0.0 24 44 845 865 841 871 0.78
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAACACGACAAAATATATACAATATGTGATGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGCGGGAAAATTATTAAACAAGAACCGTCTATTAAAGTCGACGTAAAATTTGAAAGGGAAGAGACTTCCACTCCTAACGATGAAGACAATCAATCGGATATAAATGTGGTTTTAGATGAAGTATCTAATCAAGATGGCAGAGTTGAAAAGAGCGGAAATGAATTAGATGAAACTGAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTATGTTCAGAAAGAACCTAGAAAGTCACATGAAGACGCACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATGATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGAGCCCCGCAATAGACAAATGTTGACACATGCTGAGATAAAAGAGCACGATATTTGCAAGAAAACATTTAAACATAAAAATAGTTTAAGCAGCCACACGTTGGCGGTACATTTGGGCTCTGAGGAGGTGTGTAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTTGGCTATACATTTAGGCCCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAAAACAAGAAGAATATACGCATCCACATGTCGGTTGTACATTCGGACCTTCCACCCACTCAATGCAACATTTGCAAGAAGACATTTAAATACAAGAAGAATATACGCACCCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCAATAAGAAATTTAAATATAAACATAATTTACGCAACCACATTTCGGCTGTACATTCGGACCTTTCACCCACTAAGTGCAAAATTTGCAATAAGAAATTTCAATATAAATGTAGTTTAAGCAGGCATATGTTGACTGTACATTCGGACTTTCCATCCACTCACTGCAACATTTGCATGAAGACATTTAAATATAAACAGAGTTTTAACAGGCACATGTCGACTGTACATTCGGACCTTCCACCCACTCACTGCAATATTTGCAAGAAGACATTTACATCCAAGGAGAATATACGCAAGCACATGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAAACATTTAAATCCAAGGAGACTATACGCCAGCACATGTCGATTGTACATTCGGACCTTCCACCCATTCAGTGCAACATATGCAAGAAGACATTTAAATCCAAGGAGTATATACGCCAGCACATGTCGGTTGTACATTCGGACATTCTAACCACTCAGTGCGACATATGCAAGAAGACATTTAAATCCAAGGCGAATATACGCCAGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATATGCAAGAAGACATTTAAATCCAAGGAGAATATACGCAAGCACATGTTGGCTGTACACTTGGGCTCTGAGGAGGTGTGCGACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCAAGCACATGTCGGCTGTACATATAGACCTTCCACCCACTCATTGCAACATTTGCAAGAAGACATTTAAAAACAAGAAGAATATACGCAGCCACATGTTGGCTGTACATTCAGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAACAAAAATAATTTAAGCAGCCACATGTCGGCTGAACATTCGGACCTTCCACCCACTCATTGCAACATTTGCAAGAAGACATTTAAATACAAGAAGAATATACGCAGCCACATGTTGGCTGTACATTCAGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAAAAGAATTTAAGCAGCCACATGTTGGCTGTACATTCGGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAAAAGAATTTAAGCAGCCACATGTTGGCTGTACATTCGGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAGAAGAATTTAAGCAGCCACATGTCGGCTGTACATTCAGACCTTTCACCAACTCAGTGCGACATGATAATATGCAAGAAGACATTTAAATCCAAGGAGAATATACGCAAGCACAAGTTGGCTGTACACTTGGGCTCTGAGGAGGTGTGCGACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCAAGCACATGTCGGCTGTACATACAGACCTTCCACCCACTCACTGCAATATTTGCAAGAAGACATTTAAATATAAACAGGGTTTAAGCAGCCACATATTGGCTGTACATTTAGGCTTGAAGCGACCACACACtaaaaaaatagtacattactctagttcaactagagagcaaaatcgttttttgctgcgagtgcagactttaaatcacgaactagcgaagtcgtctatagaattgattcaagagcgtagcgagtga
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHATFGILFEPSEHDKIYTICDECIEKLRISTDLKIACGKIIKQEPSIKVDVKFEREETSTPNDEDNQSDINVVLDEVSNQDGRVEKSGNELDETENDRHENKCNICNKTFMFRKNLESHMKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSICNDGFTLSRSLKAHMKTHKDRTPHEPRNRQMLTHAEIKEHDICKKTFKHKNSLSSHTLAVHLGSEEVCNICKKTFKYKQGLRRHMLAIHLGPELRPFKCDICKKTFKNKKNIRIHMSVVHSDLPPTQCNICKKTFKYKKNIRTHMLAVHSDLPPTQCNICNKKFKYKHNLRNHISAVHSDLSPTKCKICNKKFQYKCSLSRHMLTVHSDFPSTHCNICMKTFKYKQSFNRHMSTVHSDLPPTHCNICKKTFTSKENIRKHMLAVHLGSEEVCNICKKTFKSKETIRQHMSIVHSDLPPIQCNICKKTFKSKEYIRQHMSVVHSDILTTQCDICKKTFKSKANIRQHMSAVHSDLPPTQCNICKKTFKSKENIRKHMLAVHLGSEEVCDICKKTFKSKQSLRKHMSAVHIDLPPTHCNICKKTFKNKKNIRSHMLAVHSDLPPTQCDICKKTFKNKNNLSSHMSAEHSDLPPTHCNICKKTFKYKKNIRSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMSAVHSDLSPTQCDMIICKKTFKSKENIRKHKLAVHLGSEEVCDICKKTFKSKQSLRKHMSAVHTDLPPTHCNICKKTFKYKQGLSSHILAVHLGLKRPHTKKIVHYSSSTREQNRFLLRVQTLNHELAKSSIELIQERSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388685;
- 90% Identity
- iTF_01388685;
- 80% Identity
- iTF_01388685;