Stip003650.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:4451666-4455562[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.021 11 6.4 7.0 11 43 136 169 132 170 0.76 2 25 1.2 6.2e+02 0.8 2.2 12 30 162 180 158 185 0.83 3 25 0.14 71 3.8 1.1 12 41 190 216 181 223 0.78 4 25 0.23 1.2e+02 3.1 0.5 21 39 241 261 240 264 0.91 5 25 0.0004 0.2 11.9 1.2 18 39 266 284 265 288 0.91 6 25 0.019 9.3 6.6 0.7 18 43 297 319 295 320 0.84 7 25 0.00069 0.35 11.2 1.3 18 43 326 348 324 349 0.88 8 25 9.6e-05 0.048 13.9 2.9 18 44 355 378 353 378 0.93 9 25 0.0037 1.9 8.9 2.2 18 44 384 407 379 407 0.88 10 25 0.0029 1.5 9.2 3.5 18 44 413 436 411 436 0.90 11 25 0.027 14 6.1 2.8 19 41 443 462 441 465 0.82 12 25 0.012 6 7.3 2.1 18 43 470 492 468 493 0.81 13 25 0.019 9.7 6.6 3.4 9 33 490 511 485 522 0.69 14 25 0.013 6.4 7.1 2.0 18 44 528 551 515 551 0.88 15 25 0.0031 1.6 9.1 0.8 18 41 557 577 555 580 0.83 16 25 0.027 13 6.1 1.2 18 43 585 607 583 608 0.89 17 25 0.033 17 5.8 6.4 17 43 613 636 601 637 0.79 18 25 0.00035 0.18 12.1 0.6 18 44 643 666 641 666 0.92 19 25 0.0082 4.2 7.7 4.3 19 43 673 694 671 695 0.89 20 25 0.00062 0.32 11.3 0.5 18 43 701 723 699 724 0.90 21 25 0.00062 0.32 11.3 0.5 18 43 730 752 728 753 0.90 22 25 0.00026 0.13 12.5 0.5 18 44 759 782 757 782 0.93 23 25 2.8 1.4e+03 -0.3 0.3 20 31 792 803 788 813 0.81 24 25 0.0096 4.8 7.5 0.4 18 43 818 840 815 841 0.90 25 25 0.00048 0.24 11.7 0.7 19 43 848 876 843 877 0.77
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAACACGACAAAATATATACAATATGTGATGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGCGGGAAAATTATTAAACAAGAACCGTCTATTAAAGTCGACGTAAAATTTGAAAGGGAAGAGACTTCCACTCCTAACGATGAAGACAATCAATCGGATATAAATGTGGTTTTAGATGAAGTATCTAATCAAGATGGCAGAGTTGAAAAGAGCGGAAATGAATTAGATGAAACTGAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTATGTTCAGAAAGAACCTAGAAAGTCACATGAAGACGCACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATGATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGAGCCCCGCAATAGACAAATGTTGACACATGCTGAGATAAAAGAGCACGATATTTGCAAGAAAACATTTAAACATAAAAATAGTTTAAGCAGCCACACGTTGGCGGTACATTTGGGCTCTGAGGAGGTGTGTAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTTGGCTATACATTTAGGCCCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAAAACAAGAAGAATATACGCATCCACATGTCGGTTGTACATTCGGACCTTCCACCCACTCAATGCAACATTTGCAAGAAGACATTTAAATACAAGAAGAATATACGCACCCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCAATAAGAAATTTAAATATAAACATAATTTACGCAACCACATTTCGGCTGTACATTCGGACCTTTCACCCACTAAGTGCAAAATTTGCAATAAGAAATTTCAATATAAATGTAGTTTAAGCAGGCATATGTTGACTGTACATTCGGACTTTCCATCCACTCACTGCAACATTTGCATGAAGACATTTAAATATAAACAGAGTTTTAACAGGCACATGTCGACTGTACATTCGGACCTTCCACCCACTCACTGCAATATTTGCAAGAAGACATTTACATCCAAGGAGAATATACGCAAGCACATGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAAACATTTAAATCCAAGGAGACTATACGCCAGCACATGTCGATTGTACATTCGGACCTTCCACCCATTCAGTGCAACATATGCAAGAAGACATTTAAATCCAAGGAGTATATACGCCAGCACATGTCGGTTGTACATTCGGACATTCTAACCACTCAGTGCGACATATGCAAGAAGACATTTAAATCCAAGGCGAATATACGCCAGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATATGCAAGAAGACATTTAAATCCAAGGAGAATATACGCAAGCACATGTTGGCTGTACACTTGGGCTCTGAGGAGGTGTGCGACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCAAGCACATGTCGGCTGTACATATAGACCTTCCACCCACTCATTGCAACATTTGCAAGAAGACATTTAAAAACAAGAAGAATATACGCAGCCACATGTTGGCTGTACATTCAGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAACAAAAATAATTTAAGCAGCCACATGTCGGCTGAACATTCGGACCTTCCACCCACTCATTGCAACATTTGCAAGAAGACATTTAAATACAAGAAGAATATACGCAGCCACATGTTGGCTGTACATTCAGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAAAAGAATTTAAGCAGCCACATGTTGGCTGTACATTCGGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAAAAGAATTTAAGCAGCCACATGTTGGCTGTACATTCGGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAGAAGAATTTAAGCAGCCACATGTCGGCTGTACATTCAGACCTTTCACCAACTCAGTGCGACATGATAATATGCAAGAAGACATTTAAATCCAAGGAGAATATACGCAAGCACAAGTTGGCTGTACACTTGGGCTCTGAGGAGGTGTGCGACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCAAGCACATGTCGGCTGTACATACAGACCTTCCACCCACTCACTGCAATATTTGCAAGAAGACATTTAAATATAAACAGGGTTTAAGCAGCCACATATTGGCTGTACATTTAGGCTTGAAGCGACCACACACtaaaaaaatagtacattactctagttcaactagagagcaaaatcgttttttgctgcgagtgcagactttaaatcacgaactagcgaagtcgtctatagaattgattcaagagcgtagcgagtga
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHATFGILFEPSEHDKIYTICDECIEKLRISTDLKIACGKIIKQEPSIKVDVKFEREETSTPNDEDNQSDINVVLDEVSNQDGRVEKSGNELDETENDRHENKCNICNKTFMFRKNLESHMKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSICNDGFTLSRSLKAHMKTHKDRTPHEPRNRQMLTHAEIKEHDICKKTFKHKNSLSSHTLAVHLGSEEVCNICKKTFKYKQGLRRHMLAIHLGPELRPFKCDICKKTFKNKKNIRIHMSVVHSDLPPTQCNICKKTFKYKKNIRTHMLAVHSDLPPTQCNICNKKFKYKHNLRNHISAVHSDLSPTKCKICNKKFQYKCSLSRHMLTVHSDFPSTHCNICMKTFKYKQSFNRHMSTVHSDLPPTHCNICKKTFTSKENIRKHMLAVHLGSEEVCNICKKTFKSKETIRQHMSIVHSDLPPIQCNICKKTFKSKEYIRQHMSVVHSDILTTQCDICKKTFKSKANIRQHMSAVHSDLPPTQCNICKKTFKSKENIRKHMLAVHLGSEEVCDICKKTFKSKQSLRKHMSAVHIDLPPTHCNICKKTFKNKKNIRSHMLAVHSDLPPTQCDICKKTFKNKNNLSSHMSAEHSDLPPTHCNICKKTFKYKKNIRSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMSAVHSDLSPTQCDMIICKKTFKSKENIRKHKLAVHLGSEEVCDICKKTFKSKQSLRKHMSAVHTDLPPTHCNICKKTFKYKQGLSSHILAVHLGLKRPHTKKIVHYSSSTREQNRFLLRVQTLNHELAKSSIELIQERSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388722; iTF_01389086;
- 90% Identity
- iTF_01388722; iTF_01389086;
- 80% Identity
- iTF_01388722; iTF_01389086;