Stip003353.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:127944-132649[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.031 1.1e+02 3.3 0.1 23 44 407 428 404 435 0.90 2 15 0.063 2.3e+02 2.3 0.0 20 49 461 490 454 496 0.89 3 15 0.038 1.4e+02 3.0 0.0 27 48 499 520 493 523 0.89 4 15 0.0037 13 6.2 0.0 24 49 527 552 524 557 0.89 5 15 0.0071 26 5.3 0.0 24 49 558 583 554 588 0.87 6 15 0.0036 13 6.3 0.0 24 49 589 614 584 619 0.88 7 15 0.0035 13 6.3 0.0 24 50 620 646 615 650 0.92 8 15 0.096 3.5e+02 1.7 0.0 24 48 651 675 647 678 0.88 9 15 0.18 6.4e+02 0.8 0.0 27 49 682 704 680 709 0.88 10 15 2 7.2e+03 -2.5 0.0 29 49 715 735 710 739 0.82 11 15 0.19 6.8e+02 0.8 0.0 24 48 741 765 737 769 0.88 12 15 0.13 4.7e+02 1.3 0.0 26 49 771 794 762 799 0.86 13 15 1.8 6.4e+03 -2.4 0.0 29 49 805 825 800 830 0.82 14 15 0.19 7e+02 0.7 0.0 24 48 831 855 827 858 0.87 15 15 0.14 5.2e+02 1.1 0.1 26 49 861 884 851 888 0.87
Sequence Information
- Coding Sequence
- ATGGCTGAAACATTAAACTCAACACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTTTATTTTCCGACTTCATTAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACATTTGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATATCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGAGGGCACTGTCGTGCTCGACTTGACGGGGGCACTGCAGAGACCCCAGATATGAAACAAGAGACCTCTGAGGATGAAGACAGTGACATGGATATAATAAATGAGGGTTCAGACGAAGATTGCAATCAAGAGGTCAAAGTTGAAGACAGCGGAAACAAATCTGATCAAACCTGGAGTGAATCTGAAACGTACTTCATAGAAGAAGCGTTAATAGCAGACGACATCAAAGTTGAAACAGAAGAGATGGTCAACGATGAACACTCTGGAATAAATAAGGTTTTAAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATATCACAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGAGTTCAATGAAGAGTGTGAAATGAAATCAGATGAAACCTTTAATGATGCTGGTGTCAGTTTAAGAAAAGCAAGCGACATACATGAGTATAAATGCAACATTTGCAATAAAACTTTCAAACGCAAGGTGACCCTAGAAAATCACATCAGAACTCACGATGGCTCCAAACGCCAAACACGTGCAGCAATATTGTTGAATAAGAGAGAGAACGCGAAACACCATCAGTTGAAGGTTCACATGGACAGAGAGACACGTGAGTGCCAAGAGTGCGGCCGGAGATTCACAGAAAAGTCAAGCTTACTGAGACATTGTCAAAACATGCACGTGGGTGGAAAAAAATTCACAGAAAAGAGAAAATTACTACGGCATTGTCGAGAGGTGCATAATATGGATGTAAAAAAGTACAGTTACCGGTTTTGCGATAAAAGAATTGCGACTAAACAGGCATTGGTTCTATATGAAAGGACACACACGGGAGTAAAATCGTATGTCTGCAAAATATGCGATAAACCGTTTCATAGTATAAGGGGTTTACTGGATCATAATGCAGTGCATTTGGAATATAATTATAAGCCTTTCACTTGTAACGTGTGTGATAAAGCATTCAAAAAGAAAAATACTTTAAACAGACACATCTTGACGCATACTAGGATAAAATCTTTTCAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATCATTTTAATAATCACATGAAGAAGGTCCATACGAGCGAAAGTCCTTACAAATGCGGCACTTGCAAGAAGACATTTAAACACAAAAAGAGTTTAGGCGAGCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCTGTTTGAGTGTGACATTTGTAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCTAACGCCCTCTGAGTGTGACATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCGTTAAGCCAACGCCCTCTGAGTGTGACATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTATACATTTGGGCTTTAAGCCAACGCCCTCTGAGTGTGACATTTGTAAAAAGACATTTAAACACAAAAACAGTTTAAGGAAGCACATGTCGGCTGTACATTTGGCCTTTAAGCTAACCCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAACATAATTTAAGCGAACACTTGTTGGCTGTACATTTGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAAGACAGTTTAAGGAAGCACATATCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTATGATATTTGCAAAAAGACATTTAAATATAAAAAGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAAAATAATTTAAGCGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAAGACAGTTTAAGGAAGCACATATCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTATGATATTTGCAAAAAGACATTTAAATATAAAAAGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAAAATAATTTAAGCGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCAACATTTGCAAGAAGACATTTAAATACAAAAAGAGTTTATGCAGGCACATGTCGGCTGTACATTTGGGCTTTAAAGGATTCACATAA
- Protein Sequence
- MAETLNSTPFCRCCHKNGDFKCLFSDFINENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARLDGGTAETPDMKQETSEDEDSDMDIINEGSDEDCNQEVKVEDSGNKSDQTWSESETYFIEEALIADDIKVETEEMVNDEHSGINKVLNEDVRNEDSSMNKVLDEDSNEDITNEDSSMNKVLDEEFNEECEMKSDETFNDAGVSLRKASDIHEYKCNICNKTFKRKVTLENHIRTHDGSKRQTRAAILLNKRENAKHHQLKVHMDRETRECQECGRRFTEKSSLLRHCQNMHVGGKKFTEKRKLLRHCREVHNMDVKKYSYRFCDKRIATKQALVLYERTHTGVKSYVCKICDKPFHSIRGLLDHNAVHLEYNYKPFTCNVCDKAFKKKNTLNRHILTHTRIKSFQCSVCSKSFARKDHFNNHMKKVHTSESPYKCGTCKKTFKHKKSLGEHMSVVHLGFKPTLFECDICKKTFKYKRNLSEHMSAVHLGFKLTPSECDICKKTFKYKRNLSEHMSAVHLGFKPTPFECDICKKTFKYKRNLSEHMSAVHLGVKPTPSECDICKKTFKYKRNLSEHMSAIHLGFKPTPSECDICKKTFKHKNSLRKHMSAVHLAFKLTPFECDICKKTFKYKHNLSEHLLAVHLGFKFDCNICKKTFKYKDSLRKHISAVHLGFKPTPFEYDICKKTFKYKKNLSEHMSAVHLGFKPTPFECDICKKTFKYKNNLSEHMSAVHSGFKFDCNICKKTFKYKDSLRKHISAVHLGFKPTPFEYDICKKTFKYKKNLSEHMSAVHLGFKPTPFECDICKKTFKYKNNLSEHMSAVHSGFKFDCNICKKTFKYKKSLCRHMSAVHLGFKGFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388687;
- 90% Identity
- iTF_01388687;
- 80% Identity
- iTF_01388687;