Stip003353.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:127944-132649[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0019 0.97 9.8 1.7 18 40 247 266 241 268 0.77 2 19 0.39 2e+02 2.4 3.9 2 43 286 324 285 325 0.91 3 19 1.2 5.9e+02 0.9 0.1 16 26 378 388 369 397 0.79 4 19 0.12 60 4.0 1.0 18 39 410 428 406 433 0.83 5 19 1.5 7.5e+02 0.5 4.4 14 43 434 460 426 461 0.79 6 19 2.9 1.5e+03 -0.4 6.1 5 34 454 480 450 490 0.77 7 19 0.0013 0.66 10.3 0.8 15 43 495 520 488 521 0.86 8 19 0.0018 0.9 9.9 0.3 18 43 529 551 524 552 0.89 9 19 0.0012 0.61 10.4 0.1 18 43 560 582 554 583 0.88 10 19 0.0035 1.7 9.0 0.2 18 41 591 611 586 614 0.86 11 19 0.014 6.9 7.0 0.5 18 43 622 644 616 645 0.88 12 19 0.00051 0.26 11.6 0.3 17 43 652 675 647 676 0.86 13 19 0.0021 1 9.7 0.3 16 43 679 703 677 704 0.82 14 19 0.031 16 5.9 0.2 21 43 715 734 714 735 0.92 15 19 0.00019 0.095 13.0 0.1 18 44 743 766 737 766 0.90 16 19 0.0021 1 9.7 0.3 16 43 769 793 767 794 0.82 17 19 0.031 16 5.9 0.2 21 43 805 824 804 825 0.92 18 19 0.00019 0.095 13.0 0.1 18 44 833 856 827 856 0.90 19 19 0.0018 0.9 9.9 2.2 16 43 859 883 857 884 0.88
Sequence Information
- Coding Sequence
- ATGGCTGAAACATTAAACTCAACACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTTTATTTTCCGACTTCATTAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACATTTGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATATCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGAGGGCACTGTCGTGCTCGACTTGACGGGGGCACTGCAGAGACCCCAGATATGAAACAAGAGACCTCTGAGGATGAAGACAGTGACATGGATATAATAAATGAGGGTTCAGACGAAGATTGCAATCAAGAGGTCAAAGTTGAAGACAGCGGAAACAAATCTGATCAAACCTGGAGTGAATCTGAAACGTACTTCATAGAAGAAGCGTTAATAGCAGACGACATCAAAGTTGAAACAGAAGAGATGGTCAACGATGAACACTCTGGAATAAATAAGGTTTTAAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATATCACAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGAGTTCAATGAAGAGTGTGAAATGAAATCAGATGAAACCTTTAATGATGCTGGTGTCAGTTTAAGAAAAGCAAGCGACATACATGAGTATAAATGCAACATTTGCAATAAAACTTTCAAACGCAAGGTGACCCTAGAAAATCACATCAGAACTCACGATGGCTCCAAACGCCAAACACGTGCAGCAATATTGTTGAATAAGAGAGAGAACGCGAAACACCATCAGTTGAAGGTTCACATGGACAGAGAGACACGTGAGTGCCAAGAGTGCGGCCGGAGATTCACAGAAAAGTCAAGCTTACTGAGACATTGTCAAAACATGCACGTGGGTGGAAAAAAATTCACAGAAAAGAGAAAATTACTACGGCATTGTCGAGAGGTGCATAATATGGATGTAAAAAAGTACAGTTACCGGTTTTGCGATAAAAGAATTGCGACTAAACAGGCATTGGTTCTATATGAAAGGACACACACGGGAGTAAAATCGTATGTCTGCAAAATATGCGATAAACCGTTTCATAGTATAAGGGGTTTACTGGATCATAATGCAGTGCATTTGGAATATAATTATAAGCCTTTCACTTGTAACGTGTGTGATAAAGCATTCAAAAAGAAAAATACTTTAAACAGACACATCTTGACGCATACTAGGATAAAATCTTTTCAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATCATTTTAATAATCACATGAAGAAGGTCCATACGAGCGAAAGTCCTTACAAATGCGGCACTTGCAAGAAGACATTTAAACACAAAAAGAGTTTAGGCGAGCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCTGTTTGAGTGTGACATTTGTAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCTAACGCCCTCTGAGTGTGACATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCGTTAAGCCAACGCCCTCTGAGTGTGACATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTATACATTTGGGCTTTAAGCCAACGCCCTCTGAGTGTGACATTTGTAAAAAGACATTTAAACACAAAAACAGTTTAAGGAAGCACATGTCGGCTGTACATTTGGCCTTTAAGCTAACCCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAACATAATTTAAGCGAACACTTGTTGGCTGTACATTTGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAAGACAGTTTAAGGAAGCACATATCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTATGATATTTGCAAAAAGACATTTAAATATAAAAAGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAAAATAATTTAAGCGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAAGACAGTTTAAGGAAGCACATATCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTATGATATTTGCAAAAAGACATTTAAATATAAAAAGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAAAATAATTTAAGCGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCAACATTTGCAAGAAGACATTTAAATACAAAAAGAGTTTATGCAGGCACATGTCGGCTGTACATTTGGGCTTTAAAGGATTCACATAA
- Protein Sequence
- MAETLNSTPFCRCCHKNGDFKCLFSDFINENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARLDGGTAETPDMKQETSEDEDSDMDIINEGSDEDCNQEVKVEDSGNKSDQTWSESETYFIEEALIADDIKVETEEMVNDEHSGINKVLNEDVRNEDSSMNKVLDEDSNEDITNEDSSMNKVLDEEFNEECEMKSDETFNDAGVSLRKASDIHEYKCNICNKTFKRKVTLENHIRTHDGSKRQTRAAILLNKRENAKHHQLKVHMDRETRECQECGRRFTEKSSLLRHCQNMHVGGKKFTEKRKLLRHCREVHNMDVKKYSYRFCDKRIATKQALVLYERTHTGVKSYVCKICDKPFHSIRGLLDHNAVHLEYNYKPFTCNVCDKAFKKKNTLNRHILTHTRIKSFQCSVCSKSFARKDHFNNHMKKVHTSESPYKCGTCKKTFKHKKSLGEHMSVVHLGFKPTLFECDICKKTFKYKRNLSEHMSAVHLGFKLTPSECDICKKTFKYKRNLSEHMSAVHLGFKPTPFECDICKKTFKYKRNLSEHMSAVHLGVKPTPSECDICKKTFKYKRNLSEHMSAIHLGFKPTPSECDICKKTFKHKNSLRKHMSAVHLAFKLTPFECDICKKTFKYKHNLSEHLLAVHLGFKFDCNICKKTFKYKDSLRKHISAVHLGFKPTPFEYDICKKTFKYKKNLSEHMSAVHLGFKPTPFECDICKKTFKYKNNLSEHMSAVHSGFKFDCNICKKTFKYKDSLRKHISAVHLGFKPTPFEYDICKKTFKYKKNLSEHMSAVHLGFKPTPFECDICKKTFKYKNNLSEHMSAVHSGFKFDCNICKKTFKYKKSLCRHMSAVHLGFKGFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388725; iTF_01389085;
- 90% Identity
- iTF_01388725; iTF_01389085;
- 80% Identity
- iTF_01388725; iTF_01389085;