Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392410.1:8896948-8906206[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.011 0.62 10.9 0.6 3 23 688 709 687 709 0.96

2 23 0.067 3.9 8.4 0.3 1 21 1080 1100 1080 1101 0.96

3 23 7.7 4.5e+02 1.9 0.3 1 22 1143 1164 1143 1166 0.82

4 23 0.0064 0.38 11.6 0.5 3 21 1177 1195 1175 1196 0.95

5 23 1.7 97 4.0 0.0 3 23 1205 1226 1203 1226 0.88

6 23 0.012 0.72 10.7 0.1 3 23 1247 1268 1245 1268 0.96

7 23 0.0043 0.25 12.1 3.5 1 23 1274 1297 1274 1297 0.95

8 23 0.14 8.4 7.3 0.0 1 23 1323 1346 1323 1346 0.90

9 23 0.022 1.3 9.9 3.4 1 23 1351 1373 1351 1373 0.97

10 23 0.0099 0.58 11.0 0.2 1 23 1379 1402 1379 1402 0.95

11 23 0.0027 0.16 12.8 1.3 1 23 1415 1437 1415 1437 0.97

12 23 0.0002 0.012 16.3 1.8 1 23 1486 1509 1486 1509 0.97

13 23 0.0014 0.082 13.7 1.0 1 23 1569 1592 1569 1592 0.96

14 23 0.0011 0.062 14.0 2.0 2 23 1615 1637 1614 1637 0.95

15 23 0.032 1.9 9.4 0.1 2 23 1643 1665 1642 1665 0.94

16 23 0.015 0.85 10.5 0.2 1 21 1710 1730 1710 1731 0.95

17 23 0.0014 0.082 13.7 0.6 1 23 1741 1763 1741 1763 0.93

18 23 0.0001 0.0059 17.3 0.3 2 23 1854 1876 1854 1876 0.93

19 23 3.8e-07 2.2e-05 24.9 1.4 3 23 1883 1903 1882 1903 0.98

20 23 0.0078 0.46 11.3 0.4 1 23 1922 1944 1922 1945 0.95

21 23 0.045 2.6 8.9 0.0 1 23 1966 1988 1966 1988 0.98

22 23 0.015 0.88 10.4 1.0 1 23 1994 2017 1994 2017 0.95

23 23 0.00036 0.021 15.5 0.7 1 23 2025 2048 2025 2048 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.011	0.62	10.9	0.6	3	23	688	709	687	709	0.96
2	23	0.067	3.9	8.4	0.3	1	21	1080	1100	1080	1101	0.96
3	23	7.7	4.5e+02	1.9	0.3	1	22	1143	1164	1143	1166	0.82
4	23	0.0064	0.38	11.6	0.5	3	21	1177	1195	1175	1196	0.95
5	23	1.7	97	4.0	0.0	3	23	1205	1226	1203	1226	0.88
6	23	0.012	0.72	10.7	0.1	3	23	1247	1268	1245	1268	0.96
7	23	0.0043	0.25	12.1	3.5	1	23	1274	1297	1274	1297	0.95
8	23	0.14	8.4	7.3	0.0	1	23	1323	1346	1323	1346	0.90
9	23	0.022	1.3	9.9	3.4	1	23	1351	1373	1351	1373	0.97
10	23	0.0099	0.58	11.0	0.2	1	23	1379	1402	1379	1402	0.95
11	23	0.0027	0.16	12.8	1.3	1	23	1415	1437	1415	1437	0.97
12	23	0.0002	0.012	16.3	1.8	1	23	1486	1509	1486	1509	0.97
13	23	0.0014	0.082	13.7	1.0	1	23	1569	1592	1569	1592	0.96
14	23	0.0011	0.062	14.0	2.0	2	23	1615	1637	1614	1637	0.95
15	23	0.032	1.9	9.4	0.1	2	23	1643	1665	1642	1665	0.94
16	23	0.015	0.85	10.5	0.2	1	21	1710	1730	1710	1731	0.95
17	23	0.0014	0.082	13.7	0.6	1	23	1741	1763	1741	1763	0.93
18	23	0.0001	0.0059	17.3	0.3	2	23	1854	1876	1854	1876	0.93
19	23	3.8e-07	2.2e-05	24.9	1.4	3	23	1883	1903	1882	1903	0.98
20	23	0.0078	0.46	11.3	0.4	1	23	1922	1944	1922	1945	0.95
21	23	0.045	2.6	8.9	0.0	1	23	1966	1988	1966	1988	0.98
22	23	0.015	0.88	10.4	1.0	1	23	1994	2017	1994	2017	0.95
23	23	0.00036	0.021	15.5	0.7	1	23	2025	2048	2025	2048	0.96

Sequence Information

Coding Sequence: ATGAATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTAGAGGCGAATTACTGCCGATTTTCCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTCGAAAATCAAGGATTGTGTCTCTGTCGAGATTAACGAGAATGACGACCTTCCGACAAATGTCTGCAAGAAATGCATGGACAATGTCAATAACTGGCACATATTTAAGTCAGTGTGTGTGAAGTCCCAAAACAAACTAGAATCTTTTATAAAAGATGGCAGCCAACTAGAAGAGGTGAAGATAAAAAATGAACCTTTATCAGATGAGGCTTATGAAGATGGAGTAGTTATTGATGGGTCATATCCTGACATTGAGAATGGTGGGAGCAAATTGCAGCCTGAAGGCCCACCAATCTTGGCTTCGTTAGGGCTTACACCGAGGAGTGATAAGAAATTAGATCCTCGTATGGATTGGCATCGAGTGCATGCAATATTGGATATAGTTCAAGACGATGATGTAATCGATTCACTGCAAAATACAGAGGAGTTTGACGACCTGCAACATTCCGATCACAACTCGGACACTGAAGGTGATTTGCAGTCCGACATTGATGAGGAATATGTGGACTCCAAAGATGGTTATATGTGCAAAAATGGAAGACTCATGGCGAAATTCTTAAACGCAGATATTACAAAAAACTCGCAAAGAGAGTGTGAATCTGTTGTAAATTTCAAAAAGAGGAAGTTGACCTCAAAAAGTTGTCCCCGACCGAGATTCGCATGGCAAATGTTTTTCACAGAGGATCTGTTGAATCATATAGTCGATTCGACGAATGCAAATATATCATCCAGCGTCATGAATATCCTTGAATTGAAGACTTTGATAGGCATTTTGTATTTCCATGGCATCATGAGACCGACTCATACCAAACTATGTGACCTTTGGCACAGTGATTACGGAATCAACTGTGTCATTGAGTCTATGAAGTATGACAGGTTTAAGTTTTTACTTCAAAACATTCGTTTCAGTCAAGAGAGTGACGATAGCGTTATACAGTTGGACGTTATGAAGCAAATGCGTAAAGTGTTTGAAATATTTGCTTTGAATTGTAGAACAGTTTTCAACGTAGATAGAATAGCGGTCATCGATGAGGTCATTGTGCCTGTATACGGACCTTGTCCGTTCCGATACAATATTGATAGAAAGCCTACAAAGTCAGGCATTAAGTTGGCACTCCTCGTGGATCCGTCTAATTTCTACATAAGTAATGTTGATGTAATTGTGGACCGTTATTTCGGTGCTGAAGATGTGACAAAAAAAATGGTTCAACATTTGCAAGGTTCGTGGAGAACAGTCCTAATGGACAGTTGGTTTACGTCCATAAAATTACTGGAAACATTGAAAACCGAACACAGTCTGTTTAGTATTGCCGCAGTAAAACCGTCCGAAGAGTTTATACCGCCAACGTTTTTTTCCCAATATCGAAAACCTCAATCGGTTATGACTGGATATCTAAACGATGAATGTATTTTATCGTCGTATGTTACATCTCAATCGAAATCAATTAATGTATTGACAAATGACCCGGATTATGTAACGAACAAGTATAGAAATGTTGTAAAATTTTACATGAAGAATAAATCTTGCGTTGAAGTCGTGGACGTAGTAATGCATTACTATACGACCATGCAGCACACGAACAGTTGGACGCTCTCACTATTTTTTACTCTTTTGAATATAGCCGCAGTGAATTCGCAAGTCGTTTGGAGTTCGGCAAACAGTTCGTGTTTAATACAGAGACGGTTGTTCCTGAGAGAGCTGGCTTTAAGTCTAATGGAAAATTCATATGTGAATGTAGAATTGACATCAGCTGTGAAACAACAGAAGACATCGCGTTTCGAAGATGGTGCAGAGAGTGAGAAAGAAGAAGAAGAGGATGAAGAGATGAACGAAGCCGGTGACCAGTACCCCCCCGTAGCGAACATGCCCGAGGTGTCGATAACAGTGATGCGACCCACCGGAGAGACCTTACAGTCTCGACAGGGAATACAACAGCTCGCATCTAAAGATTGTCTCGTATGTGGACGAGCGTACAGATACTCTCATAATGCCAGACGACACGAATTGACTGCCCACAGTTTCGATAGGTATACAAACAAAATTAAGCCTAAAAAAGAGAATCCACATATAATGCTACCAAAACTTAGACCGAATCCATTTAATCCTAAAGCGCGAATGATGCCCAACCCTATTAGCCACAAAATGCAATTTATGCCCAAGAATGTACCTATTAAACAAATGCCAAGAGTTGTTATCCCACCGAAACCTGTACCTATTAGGACTAAACCACAAAACAATTTACCGTATCCTCTTCGAATAAAGGCTTTAAAGGATTTGCAAATTAAGAAGAAGGAGCCAGAAATATTGAAAACTCTTTTAACCACTAAACCGGAAGTGCTCGTTTCCGAACCGGAGATAATAAATTCTGGCCCCGAAAGCCCTGAAACATTGATTTCAGAGCCAGAAATTGCATCGTTTCAAGTTGAAGCCATCCTTTCTGAGCCCGATGTTTACGATCAACAGCAAGGCGACGAAGAAAACGGGGAAAATTTGGACAATAATCAAGGGCACAATTATGACACTGTCGATATGGATTCCGATAATGAAATAGAAATTGCAAGGGAACGAGAGAACGAGAACAATGTCGACGAGAACAATATGGGTCAAGACGGTGATGGCAATTCCATAGAAATCAATGAAAATAACATTGAAGGCCAACAGAGCGATAAAGACGAGGACGACGAAATGGGTGATAGTCAGGACGGTGTGGCCGAATCTAAAGAAGATGAAAATAAAAATGGTGAAACATATGACGATCAAGAACAGCAACAAGGGGACAACGACGAAGAATATGACGACGATCTCCCACCTATGGACATAACACCTGTCGTTGAAATCAATGAGGATATGCAGACAAACTCATTTAATAGCGAAATGAATGAAGACGATGAAGATTTAGACGTATCGGGCGAAGCTAACGATACAGTTGACGGTGAAGAGAATGACGCGAAAAATCTCGATCCGAATAAGCTCTATGTTACGAAAACACAGAGAGACTTTATTAATAAGTATCGCGACATCATAGAGCAAATAAACACCAAACGGTGTCTCTGTTGCGACAGGGAACACCCTCGAAGGAAAGCGGTGATTCAACATCTGCAGAAAAATGGTCATAAGGTACCGAAACATACGTGTTACAATTGTGTCGTTACATTTAGCCATATCGGTGCACTGCTCAGTCATATGAGAGCAAATGTTTGCACGGATCTGTGGAAGATTATCTTTGACGAAAATGGTATTACAGATGACATGGTTATAGAAGATGAACCAAAAGATGCCAAAGTTCAATATAAAGACATTTTTAATGCTCGTTCTTATGCTTGTAAACTATGCCCTGCCAAATTCCAACTTAAACAGTTTATTATGAAGCATGTTTTGGATGTCCACGAGGATGGACAGTCTATGGTGCCGATGGCGTGTGTCCATTGCGGTTCTAGGTTCAAAGACAAGGCCATGTGGAAGAAACATATCCGCAATGGCGAGTGTACGGTTTACATAGCTTGCGATTTGTGTCCTGAAAAATTTATCAGCATGCAAGATTTCAGCGAGCACGCCTTAGCCACTCACGCTGGTAATTTCGAACAGAATGAAAATCAGAATAAATGTGTCGACGGAAGACCGACCGATTGTCCTGTGTGCGGGAAGAAGAACAGTAGCTATCCAAATTTGGTGAAACATTTGAAGATTATACACAACGAAGAGAAACCTCATTACTGTCAACACTGTGATTCCAAGTTCGAACAAGCCACCGACCTGAACAAACATATTTATATGGAGCACTCTGACCGCGTTTTGGGCCTACAAACCACCGAACCTGATATGAGTATCGTCAAGGAGGAGACTGAAGAATATCACTACTCGTGCACTGAGTGCAATGCTATATTCGAAACGGTTGACGCTTGGACCGATCATCAGGTCGCCGAACATAATCAGGTTGCACATCACTGCGATCAATGCGAGAAAAAGTTCTTGCGGCCATCTGAACTCGCCGAGCATAAGAATACGCACTTGCGTGTTAAGTTCTATCCGTGTAGTGTTTGTCCAAACTCGTATAGCACTCCGCAGAAATTGTCCGAGCACGTCCAACAAAGTCACCCCGGAGCGGCTTCATACGCCGCAGCAGATTCCGAATTCTTTTGTGACATCTGCATTAGATCGTTTAAGAGTCGCCAGGCTTATTCCAATCATATGCGCATACACGCTAAAGTGCCCACCACTAATAGGAAACCGGGAGATCCAAAAGGATTCTCCCCGCAGATCATCGGAAAGCCTATTAGACAATTCCCGCAAATCGTACCCGGTTTTCCCTCGTTTAAGCCAAACTGTAATGTTCCTAACGCCCCTTATTCGTGCGATATATGCGGAAAAGGTTTTATGCACAAGAAAAATATATGGAAGCACAAAAAGGTGTTGCACGCTGATATTATTAATGATAGGAACGACAGTGAGGAGAACACTATGCACGCTTCCACCGAAGAGGACGAGTACAATGTCGATGAAAATGGAATCGCTTTGTCCACGCCACAGTTCAATAGTTTTAACTTTTCAAGTTTTACTAACAACACACCCGTTCAACAGCCAGACCCGATGCCGTATGTCTGCGATCTTTGCAGCAAGCGTTTCCCACTGAGAACCAGTTTGTGGAAACACAAACGAGCTAAACACGGAATAATTAATCCCGGAGGCGAGCCACAGTCGGCCGGAGCCGGTAGCGGCGGCAGTAGTAGATCGAGTTGCACTATATGTAAAATTTCGTTCTCAGACAAGAAATCTTATTACCGCCACAGAAAGAACGTCCACAAATCGTCTACACAGATGTGTAAAATATGTGGGAAACCGTTAAGCACCACCCTCGAACTGTACGAGCACTTGAAAGCGGCTCACGCTAGAGAGTTGCTCGGCTATAACGCCAATCAAGGGACGTCCAGTAGACCGCAAACGATTACGCAAGACTTGGATCCCGATTACGAAGCCGAAATGGATGCGACCGATCCTGCGGCCGAGTACCAAGCGCGGTACCCTTGCGATACGTGCGGCAAACAATTTGTCGGACTACTCGCATTGCAAAACCATCAATGTCTCAATCAGAATTCGTCCGATCCGCAAACGTTTGATTGCGAAATTTGCCACAAGAGTTACACGTCGATTGCCGCATTAAAGAGCCATCGCGGTTGGCATTTGAGATCTCCGGACGGCAAAGCGGCCGCTAACAACTCAGGTCTCTGGATGCCGCAACACAAAGTCACCAGTAAGGTCAGCAAATACGAAGTGGTCGATGCGGTGCAACTAGCCCGCGTACAGCACTCGACTCCAGCGGCGACCGTGGCCAAAAGGCGTCTGCCGCCAGAAGTCGAAGTGACAGTTGTCAATCCGAACAAAAAATTGCGCTCAGACGACTCGATGGAAATCGAACAGCAAAGCAACTTATCGGGCACGACAGAGGACAGATATTGTAATATATGCGATAAGGAGTTCACAAAGCGCGCGGCTTACCAGCGTCACATGGACGAAGTGCATCAACCAAATTCGGTTTTTTGTCCGGTGTGCGATAAGAGTTTCACGCGGAAATCTACTCTGCTAGTTCACATGAAGAAGCATTACGAGGGAGGAGAGGGCAGTTCGGGGACCGCCGGACAAGTGGACGACGATAATTTTTCTTGCGATCTTTGCGACGCTCAGTACAATAGCGAGGCCGCGTTGAGGGCTCACCGCGAAAGGCATCACGGCGACGAATCCGGTGAGTCTGAAGACGAGGGAATAGCGAATATACTGCCACCTGGCGAGTTCACTTGCACGCAGTGCGGTGACGGTGTGGCAACACCGCGAGACCTCATCGCTCACCGTTCCATGCATGCGACACCCACAAAGTTCTTCTGCAACATATGCAAGGTGTACTTCACCAGGGCGCTAGATCTCTCGTCGCACACGCGCGCGCGACACGCCGACAACGAGAAGGTTTTCTTCCCCTGTGCCATGTGCGACCGTTTCTACATGAACAAGAAGAGTTTGCAGCGACACATCGAGATGTCTCACTGA
Protein Sequence: MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIKDCVSVEINENDDLPTNVCKKCMDNVNNWHIFKSVCVKSQNKLESFIKDGSQLEEVKIKNEPLSDEAYEDGVVIDGSYPDIENGGSKLQPEGPPILASLGLTPRSDKKLDPRMDWHRVHAILDIVQDDDVIDSLQNTEEFDDLQHSDHNSDTEGDLQSDIDEEYVDSKDGYMCKNGRLMAKFLNADITKNSQRECESVVNFKKRKLTSKSCPRPRFAWQMFFTEDLLNHIVDSTNANISSSVMNILELKTLIGILYFHGIMRPTHTKLCDLWHSDYGINCVIESMKYDRFKFLLQNIRFSQESDDSVIQLDVMKQMRKVFEIFALNCRTVFNVDRIAVIDEVIVPVYGPCPFRYNIDRKPTKSGIKLALLVDPSNFYISNVDVIVDRYFGAEDVTKKMVQHLQGSWRTVLMDSWFTSIKLLETLKTEHSLFSIAAVKPSEEFIPPTFFSQYRKPQSVMTGYLNDECILSSYVTSQSKSINVLTNDPDYVTNKYRNVVKFYMKNKSCVEVVDVVMHYYTTMQHTNSWTLSLFFTLLNIAAVNSQVVWSSANSSCLIQRRLFLRELALSLMENSYVNVELTSAVKQQKTSRFEDGAESEKEEEEDEEMNEAGDQYPPVANMPEVSITVMRPTGETLQSRQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKIKPKKENPHIMLPKLRPNPFNPKARMMPNPISHKMQFMPKNVPIKQMPRVVIPPKPVPIRTKPQNNLPYPLRIKALKDLQIKKKEPEILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDVYDQQQGDEENGENLDNNQGHNYDTVDMDSDNEIEIARERENENNVDENNMGQDGDGNSIEINENNIEGQQSDKDEDDEMGDSQDGVAESKEDENKNGETYDDQEQQQGDNDEEYDDDLPPMDITPVVEINEDMQTNSFNSEMNEDDEDLDVSGEANDTVDGEENDAKNLDPNKLYVTKTQRDFINKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRANVCTDLWKIIFDENGITDDMVIEDEPKDAKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSMVPMACVHCGSRFKDKAMWKKHIRNGECTVYIACDLCPEKFISMQDFSEHALATHAGNFEQNENQNKCVDGRPTDCPVCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKFEQATDLNKHIYMEHSDRVLGLQTTEPDMSIVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGAASYAAADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFSPQIIGKPIRQFPQIVPGFPSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEEDEYNVDENGIALSTPQFNSFNFSSFTNNTPVQQPDPMPYVCDLCSKRFPLRTSLWKHKRAKHGIINPGGEPQSAGAGSGGSSRSSCTICKISFSDKKSYYRHRKNVHKSSTQMCKICGKPLSTTLELYEHLKAAHARELLGYNANQGTSSRPQTITQDLDPDYEAEMDATDPAAEYQARYPCDTCGKQFVGLLALQNHQCLNQNSSDPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKYEVVDAVQLARVQHSTPAATVAKRRLPPEVEVTVVNPNKKLRSDDSMEIEQQSNLSGTTEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSGTAGQVDDDNFSCDLCDAQYNSEAALRAHRERHHGDESGESEDEGIANILPPGEFTCTQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFTRALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386941;
90% Identity: iTF_01387804;
80% Identity: -