Stip003353.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:127944-132649[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2e-08 1.2e-06 28.9 2.4 1 23 246 268 246 268 0.99 2 20 0.0011 0.062 14.0 2.7 2 19 302 319 302 324 0.89 3 20 7.2 4.2e+02 2.0 0.3 7 23 327 344 327 344 0.86 4 20 0.0048 0.28 12.0 0.3 1 23 379 401 379 401 0.93 5 20 3.6e-07 2.1e-05 25.0 1.8 1 23 409 431 409 431 0.98 6 20 1.2e-06 7.1e-05 23.3 4.1 1 23 437 460 437 460 0.98 7 20 4.7e-05 0.0027 18.3 3.1 1 23 466 489 466 489 0.97 8 20 3.5e-06 0.00021 21.8 1.1 1 23 497 520 497 520 0.94 9 20 1.4e-05 0.00082 20.0 0.8 2 23 529 551 528 551 0.93 10 20 3.5e-06 0.00021 21.8 1.1 1 23 559 582 559 582 0.94 11 20 1.4e-05 0.00083 20.0 0.8 2 23 591 613 590 613 0.93 12 20 6.3e-06 0.00037 21.0 2.8 2 23 622 644 621 644 0.93 13 20 1.1e-05 0.00066 20.3 1.9 1 23 652 675 652 675 0.94 14 20 2.1e-06 0.00012 22.6 1.4 1 23 680 703 680 703 0.93 15 20 0.0007 0.041 14.6 0.3 5 23 715 734 714 734 0.92 16 20 3.7e-06 0.00021 21.8 0.9 1 23 742 765 742 765 0.94 17 20 2.1e-06 0.00012 22.6 1.4 1 23 770 793 770 793 0.93 18 20 0.0007 0.041 14.6 0.3 5 23 805 824 804 824 0.92 19 20 3.7e-06 0.00021 21.8 0.9 1 23 832 855 832 855 0.94 20 20 1.6e-05 0.00091 19.8 4.4 1 23 860 883 860 883 0.94
Sequence Information
- Coding Sequence
- ATGGCTGAAACATTAAACTCAACACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTTTATTTTCCGACTTCATTAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACATTTGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATATCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGAGGGCACTGTCGTGCTCGACTTGACGGGGGCACTGCAGAGACCCCAGATATGAAACAAGAGACCTCTGAGGATGAAGACAGTGACATGGATATAATAAATGAGGGTTCAGACGAAGATTGCAATCAAGAGGTCAAAGTTGAAGACAGCGGAAACAAATCTGATCAAACCTGGAGTGAATCTGAAACGTACTTCATAGAAGAAGCGTTAATAGCAGACGACATCAAAGTTGAAACAGAAGAGATGGTCAACGATGAACACTCTGGAATAAATAAGGTTTTAAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGATTCCAATGAAGATATCACAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGAGTTCAATGAAGAGTGTGAAATGAAATCAGATGAAACCTTTAATGATGCTGGTGTCAGTTTAAGAAAAGCAAGCGACATACATGAGTATAAATGCAACATTTGCAATAAAACTTTCAAACGCAAGGTGACCCTAGAAAATCACATCAGAACTCACGATGGCTCCAAACGCCAAACACGTGCAGCAATATTGTTGAATAAGAGAGAGAACGCGAAACACCATCAGTTGAAGGTTCACATGGACAGAGAGACACGTGAGTGCCAAGAGTGCGGCCGGAGATTCACAGAAAAGTCAAGCTTACTGAGACATTGTCAAAACATGCACGTGGGTGGAAAAAAATTCACAGAAAAGAGAAAATTACTACGGCATTGTCGAGAGGTGCATAATATGGATGTAAAAAAGTACAGTTACCGGTTTTGCGATAAAAGAATTGCGACTAAACAGGCATTGGTTCTATATGAAAGGACACACACGGGAGTAAAATCGTATGTCTGCAAAATATGCGATAAACCGTTTCATAGTATAAGGGGTTTACTGGATCATAATGCAGTGCATTTGGAATATAATTATAAGCCTTTCACTTGTAACGTGTGTGATAAAGCATTCAAAAAGAAAAATACTTTAAACAGACACATCTTGACGCATACTAGGATAAAATCTTTTCAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATCATTTTAATAATCACATGAAGAAGGTCCATACGAGCGAAAGTCCTTACAAATGCGGCACTTGCAAGAAGACATTTAAACACAAAAAGAGTTTAGGCGAGCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCTGTTTGAGTGTGACATTTGTAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCTAACGCCCTCTGAGTGTGACATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCGTTAAGCCAACGCCCTCTGAGTGTGACATTTGCAAAAAGACATTTAAATACAAAAGGAATTTAAGCGAGCACATGTCGGCTATACATTTGGGCTTTAAGCCAACGCCCTCTGAGTGTGACATTTGTAAAAAGACATTTAAACACAAAAACAGTTTAAGGAAGCACATGTCGGCTGTACATTTGGCCTTTAAGCTAACCCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAACATAATTTAAGCGAACACTTGTTGGCTGTACATTTGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAAGACAGTTTAAGGAAGCACATATCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTATGATATTTGCAAAAAGACATTTAAATATAAAAAGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAAAATAATTTAAGCGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCAATATTTGCAAGAAGACATTCAAATACAAAGACAGTTTAAGGAAGCACATATCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTATGATATTTGCAAAAAGACATTTAAATATAAAAAGAATTTAAGCGAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAGTGTGATATTTGCAAAAAGACATTTAAATATAAAAATAATTTAAGCGAGCACATGTCGGCTGTACATTCGGGCTTTAAGTTTGACTGCAACATTTGCAAGAAGACATTTAAATACAAAAAGAGTTTATGCAGGCACATGTCGGCTGTACATTTGGGCTTTAAAGGATTCACATAA
- Protein Sequence
- MAETLNSTPFCRCCHKNGDFKCLFSDFINENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARLDGGTAETPDMKQETSEDEDSDMDIINEGSDEDCNQEVKVEDSGNKSDQTWSESETYFIEEALIADDIKVETEEMVNDEHSGINKVLNEDVRNEDSSMNKVLDEDSNEDITNEDSSMNKVLDEEFNEECEMKSDETFNDAGVSLRKASDIHEYKCNICNKTFKRKVTLENHIRTHDGSKRQTRAAILLNKRENAKHHQLKVHMDRETRECQECGRRFTEKSSLLRHCQNMHVGGKKFTEKRKLLRHCREVHNMDVKKYSYRFCDKRIATKQALVLYERTHTGVKSYVCKICDKPFHSIRGLLDHNAVHLEYNYKPFTCNVCDKAFKKKNTLNRHILTHTRIKSFQCSVCSKSFARKDHFNNHMKKVHTSESPYKCGTCKKTFKHKKSLGEHMSVVHLGFKPTLFECDICKKTFKYKRNLSEHMSAVHLGFKLTPSECDICKKTFKYKRNLSEHMSAVHLGFKPTPFECDICKKTFKYKRNLSEHMSAVHLGVKPTPSECDICKKTFKYKRNLSEHMSAIHLGFKPTPSECDICKKTFKHKNSLRKHMSAVHLAFKLTPFECDICKKTFKYKHNLSEHLLAVHLGFKFDCNICKKTFKYKDSLRKHISAVHLGFKPTPFEYDICKKTFKYKKNLSEHMSAVHLGFKPTPFECDICKKTFKYKNNLSEHMSAVHSGFKFDCNICKKTFKYKDSLRKHISAVHLGFKPTPFEYDICKKTFKYKKNLSEHMSAVHLGFKPTPFECDICKKTFKYKNNLSEHMSAVHSGFKFDCNICKKTFKYKKSLCRHMSAVHLGFKGFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388687;
- 90% Identity
- iTF_01388687;
- 80% Identity
- iTF_01388687;