Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392435.1:4451666-4455562[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 4.9e-06 0.00029 21.4 3.1 2 23 143 164 142 164 0.98

2 25 0.00067 0.039 14.7 1.3 1 23 167 189 167 189 0.97

3 25 9.1e-05 0.0053 17.4 1.1 1 23 195 217 195 217 0.99

4 25 0.021 1.2 10.0 2.5 5 23 241 260 239 260 0.90

5 25 6.1e-06 0.00036 21.1 0.8 2 23 266 288 266 288 0.94

6 25 1.8e-06 0.00011 22.7 1.7 1 23 296 319 296 319 0.97

7 25 3e-05 0.0017 18.9 1.8 2 23 326 348 325 348 0.94

8 25 7.7e-06 0.00045 20.8 3.0 2 23 355 377 354 377 0.93

9 25 0.00018 0.011 16.4 5.1 2 23 384 406 383 406 0.97

10 25 0.0014 0.084 13.6 4.6 3 23 414 435 412 435 0.96

11 25 2.3e-05 0.0014 19.3 2.5 2 23 442 464 441 464 0.93

12 25 3.8e-05 0.0022 18.6 1.0 2 23 470 492 470 492 0.95

13 25 1.4e-05 0.00083 19.9 0.9 2 23 499 521 498 521 0.96

14 25 1.5e-05 0.00089 19.9 0.8 2 23 528 550 527 550 0.94

15 25 4.4e-06 0.00026 21.5 1.3 2 23 557 579 556 579 0.94

16 25 3.7e-06 0.00022 21.8 1.2 2 23 585 607 585 607 0.93

17 25 8.9e-05 0.0052 17.4 3.3 2 23 614 636 613 636 0.93

18 25 3.9e-06 0.00023 21.7 1.4 2 23 643 665 642 665 0.94

19 25 0.00023 0.014 16.1 3.2 2 23 672 694 671 694 0.93

20 25 2.7e-06 0.00016 22.2 1.3 2 23 701 723 700 723 0.94

21 25 2.7e-06 0.00016 22.2 1.3 2 23 730 752 729 752 0.94

22 25 3.8e-06 0.00022 21.8 1.5 2 23 759 781 758 781 0.94

23 25 0.00062 0.036 14.8 0.8 2 23 788 812 787 812 0.91

24 25 3.7e-06 0.00022 21.8 1.2 2 23 818 840 818 840 0.93

25 25 0.00039 0.023 15.4 1.8 2 23 847 869 846 869 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	4.9e-06	0.00029	21.4	3.1	2	23	143	164	142	164	0.98
2	25	0.00067	0.039	14.7	1.3	1	23	167	189	167	189	0.97
3	25	9.1e-05	0.0053	17.4	1.1	1	23	195	217	195	217	0.99
4	25	0.021	1.2	10.0	2.5	5	23	241	260	239	260	0.90
5	25	6.1e-06	0.00036	21.1	0.8	2	23	266	288	266	288	0.94
6	25	1.8e-06	0.00011	22.7	1.7	1	23	296	319	296	319	0.97
7	25	3e-05	0.0017	18.9	1.8	2	23	326	348	325	348	0.94
8	25	7.7e-06	0.00045	20.8	3.0	2	23	355	377	354	377	0.93
9	25	0.00018	0.011	16.4	5.1	2	23	384	406	383	406	0.97
10	25	0.0014	0.084	13.6	4.6	3	23	414	435	412	435	0.96
11	25	2.3e-05	0.0014	19.3	2.5	2	23	442	464	441	464	0.93
12	25	3.8e-05	0.0022	18.6	1.0	2	23	470	492	470	492	0.95
13	25	1.4e-05	0.00083	19.9	0.9	2	23	499	521	498	521	0.96
14	25	1.5e-05	0.00089	19.9	0.8	2	23	528	550	527	550	0.94
15	25	4.4e-06	0.00026	21.5	1.3	2	23	557	579	556	579	0.94
16	25	3.7e-06	0.00022	21.8	1.2	2	23	585	607	585	607	0.93
17	25	8.9e-05	0.0052	17.4	3.3	2	23	614	636	613	636	0.93
18	25	3.9e-06	0.00023	21.7	1.4	2	23	643	665	642	665	0.94
19	25	0.00023	0.014	16.1	3.2	2	23	672	694	671	694	0.93
20	25	2.7e-06	0.00016	22.2	1.3	2	23	701	723	700	723	0.94
21	25	2.7e-06	0.00016	22.2	1.3	2	23	730	752	729	752	0.94
22	25	3.8e-06	0.00022	21.8	1.5	2	23	759	781	758	781	0.94
23	25	0.00062	0.036	14.8	0.8	2	23	788	812	787	812	0.91
24	25	3.7e-06	0.00022	21.8	1.2	2	23	818	840	818	840	0.93
25	25	0.00039	0.023	15.4	1.8	2	23	847	869	846	869	0.93

Sequence Information

Coding Sequence: ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAACACGACAAAATATATACAATATGTGATGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGCGGGAAAATTATTAAACAAGAACCGTCTATTAAAGTCGACGTAAAATTTGAAAGGGAAGAGACTTCCACTCCTAACGATGAAGACAATCAATCGGATATAAATGTGGTTTTAGATGAAGTATCTAATCAAGATGGCAGAGTTGAAAAGAGCGGAAATGAATTAGATGAAACTGAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTATGTTCAGAAAGAACCTAGAAAGTCACATGAAGACGCACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATGATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGAGCCCCGCAATAGACAAATGTTGACACATGCTGAGATAAAAGAGCACGATATTTGCAAGAAAACATTTAAACATAAAAATAGTTTAAGCAGCCACACGTTGGCGGTACATTTGGGCTCTGAGGAGGTGTGTAACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGGCACATGTTGGCTATACATTTAGGCCCTGAGTTAAGGCCCTTTAAATGTGACATTTGCAAGAAGACATTTAAAAACAAGAAGAATATACGCATCCACATGTCGGTTGTACATTCGGACCTTCCACCCACTCAATGCAACATTTGCAAGAAGACATTTAAATACAAGAAGAATATACGCACCCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCAATAAGAAATTTAAATATAAACATAATTTACGCAACCACATTTCGGCTGTACATTCGGACCTTTCACCCACTAAGTGCAAAATTTGCAATAAGAAATTTCAATATAAATGTAGTTTAAGCAGGCATATGTTGACTGTACATTCGGACTTTCCATCCACTCACTGCAACATTTGCATGAAGACATTTAAATATAAACAGAGTTTTAACAGGCACATGTCGACTGTACATTCGGACCTTCCACCCACTCACTGCAATATTTGCAAGAAGACATTTACATCCAAGGAGAATATACGCAAGCACATGTTGGCTGTACATTTGGGCTCTGAGGAGGTGTGCAACATATGCAAGAAAACATTTAAATCCAAGGAGACTATACGCCAGCACATGTCGATTGTACATTCGGACCTTCCACCCATTCAGTGCAACATATGCAAGAAGACATTTAAATCCAAGGAGTATATACGCCAGCACATGTCGGTTGTACATTCGGACATTCTAACCACTCAGTGCGACATATGCAAGAAGACATTTAAATCCAAGGCGAATATACGCCAGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATATGCAAGAAGACATTTAAATCCAAGGAGAATATACGCAAGCACATGTTGGCTGTACACTTGGGCTCTGAGGAGGTGTGCGACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCAAGCACATGTCGGCTGTACATATAGACCTTCCACCCACTCATTGCAACATTTGCAAGAAGACATTTAAAAACAAGAAGAATATACGCAGCCACATGTTGGCTGTACATTCAGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAACAAAAATAATTTAAGCAGCCACATGTCGGCTGAACATTCGGACCTTCCACCCACTCATTGCAACATTTGCAAGAAGACATTTAAATACAAGAAGAATATACGCAGCCACATGTTGGCTGTACATTCAGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAAAAGAATTTAAGCAGCCACATGTTGGCTGTACATTCGGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAAAAGAATTTAAGCAGCCACATGTTGGCTGTACATTCGGACCTTCCACCAACTCAGTGTGACATTTGTAAGAAGACATTTAAAAGCAAGAAGAATTTAAGCAGCCACATGTCGGCTGTACATTCAGACCTTTCACCAACTCAGTGCGACATGATAATATGCAAGAAGACATTTAAATCCAAGGAGAATATACGCAAGCACAAGTTGGCTGTACACTTGGGCTCTGAGGAGGTGTGCGACATATGCAAGAAGACATTTAAATCCAAGCAAAGTCTACGCAAGCACATGTCGGCTGTACATACAGACCTTCCACCCACTCACTGCAATATTTGCAAGAAGACATTTAAATATAAACAGGGTTTAAGCAGCCACATATTGGCTGTACATTTAGGCTTGAAGCGACCACACACtaaaaaaatagtacattactctagttcaactagagagcaaaatcgttttttgctgcgagtgcagactttaaatcacgaactagcgaagtcgtctatagaattgattcaagagcgtagcgagtga
Protein Sequence: MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHATFGILFEPSEHDKIYTICDECIEKLRISTDLKIACGKIIKQEPSIKVDVKFEREETSTPNDEDNQSDINVVLDEVSNQDGRVEKSGNELDETENDRHENKCNICNKTFMFRKNLESHMKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSICNDGFTLSRSLKAHMKTHKDRTPHEPRNRQMLTHAEIKEHDICKKTFKHKNSLSSHTLAVHLGSEEVCNICKKTFKYKQGLRRHMLAIHLGPELRPFKCDICKKTFKNKKNIRIHMSVVHSDLPPTQCNICKKTFKYKKNIRTHMLAVHSDLPPTQCNICNKKFKYKHNLRNHISAVHSDLSPTKCKICNKKFQYKCSLSRHMLTVHSDFPSTHCNICMKTFKYKQSFNRHMSTVHSDLPPTHCNICKKTFTSKENIRKHMLAVHLGSEEVCNICKKTFKSKETIRQHMSIVHSDLPPIQCNICKKTFKSKEYIRQHMSVVHSDILTTQCDICKKTFKSKANIRQHMSAVHSDLPPTQCNICKKTFKSKENIRKHMLAVHLGSEEVCDICKKTFKSKQSLRKHMSAVHIDLPPTHCNICKKTFKNKKNIRSHMLAVHSDLPPTQCDICKKTFKNKNNLSSHMSAEHSDLPPTHCNICKKTFKYKKNIRSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMLAVHSDLPPTQCDICKKTFKSKKNLSSHMSAVHSDLSPTQCDMIICKKTFKSKENIRKHKLAVHLGSEEVCDICKKTFKSKQSLRKHMSAVHTDLPPTHCNICKKTFKYKQGLSSHILAVHLGLKRPHTKKIVHYSSSTREQNRFLLRVQTLNHELAKSSIELIQERSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388685;
90% Identity: iTF_01388685;
80% Identity: iTF_01388685;