Stip020650.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947623395.1
- Location
- OX392410.1:11414926-11425438[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-74 2.9e-70 237.2 24.0 1 259 120 367 120 395 0.90 2 2 1 2.2e+04 -6.3 18.3 1 45 396 442 396 470 0.72
Sequence Information
- Coding Sequence
- ATGGGCAATAAATCTAAGTTCGCAACGCCCGCCAACAGTGACGGGGAGAGCGGTGAGGAGTTCACTGACGGTGATTTCGATGATGATGATACAGTTGTGATTGCAAGCGAGAGATCCACAAAACAATCTATTCCCGTAAACGAAACGCTAAACTTGGAAATAAGCAAGGTGAACGTTGATTTGAATGGGAAAGTACATGATAACGGCCTGAGTGATGCAGCGAACGGTTCCAAAGATGCGGCCAAGGTCAACGGTGTCTCTAATAGCAATGGTGATAATAAAATTTTAGAAAGAAAAGATTCCAATTCCGAACAGAATCCATCCATCGTAGGAATTCTCGGAGATCAACAGAACCATGCGGAGCAAAGGTTGGCGGCTCGGAGGGCCGCGAGGGCGGAGGCGCGTGAGATACGCATGCGTGAACTGGAACGTCAGCAGCGCGAACAAGAAGACCATGCCGATAAGGCGTACGACATGATGACAGAGAGCGTAGGTCGCCGCGGTGGCACGCGGCTGGCGGCTAAAAGTCCTGGAGGGTTACATTCGCCGCGACGGAGTTCTGAAGACTCGGCGGACGATGTCTTCAGCATCAAAGACCTTAGGCATGAATTAAAAGAAGTAGAAGAGAAGTTTCGGAAGGCGATGATCTTAAATGCTCAGTTAGATAATGATAAAGCGGCTCTCGGCTATCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAACTCCACGAGGAATACGCACAATTACAGCGGGAGCACAAGGAGAAGTGTTCGGCGCACGAGCGCTTAAAGCGCGAGCAGGTGTCGCTGGAGCGCGAGCTGGCGGCGGCGCGAGACGCGGTACGGGCGCGAGACGCGGCCGCCGCCGCCGCCGGCCTCGCGTTCGTGGAGGCGGGCGAGGGCGAGCCCTTCGGCGCCGTGCCCGCGCTCGCGCTCATCTCGCACCAGTCGGAGAGGTTGCTGGACGACGCCGGCGAGGGCACGCTGGACGTGCGGCTGCAGCGGCTGCTGGCCGCCAAGACGGCGCTCGAATCGGACGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGGTTGGCGCGCCAGAACGGCGTGGCGCATCGCCTCGACGCCGAGTACGAGGGCGAGGTGGAGGCGCTGCGCAAGTGCGTGGCGGAGGCGAAGGCGCGGGCGGCGCGCGCGGAAGCGGAGGCGGCGCTGCAGGCGGCGGCCGTCGCGCGTCTCGAGGCGCAGGCGGCGAGGCTGCGCGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGGTTGCAGCGCGAGGCTCGTGACGCCCTCAATCGGGTCGAAGAGTTGGAAACGGAGAACAGCCACCTGACGAAGCGGCTGGACAAGCTGAAGAACGCCAAGTCAGCTCTCCTCAAAGACCTATGA
- Protein Sequence
- MGNKSKFATPANSDGESGEEFTDGDFDDDDTVVIASERSTKQSIPVNETLNLEISKVNVDLNGKVHDNGLSDAANGSKDAAKVNGVSNSNGDNKILERKDSNSEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMMTESVGRRGGTRLAAKSPGGLHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREQVSLERELAAARDAVRARDAAAAAAGLAFVEAGEGEPFGAVPALALISHQSERLLDDAGEGTLDVRLQRLLAAKTALESDVRKLKLQLNEERLARQNGVAHRLDAEYEGEVEALRKCVAEAKARAARAEAEAALQAAAVARLEAQAARLRARQDHQDEHEEQLKQERRRLQREARDALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386723; iTF_01387617;
- 90% Identity
- iTF_01386723; iTF_01387617;
- 80% Identity
- -