Smyo017340.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_944738625.1
- Location
- CALYFO010001307.1:148337-158098[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-75 2.5e-71 240.6 23.1 1 260 121 369 121 396 0.91 2 2 1 2.1e+04 -6.1 18.2 1 45 397 443 397 475 0.73
Sequence Information
- Coding Sequence
- ATGGGCAATAAATCTAAGTTCGCAACGCCCGCCAACAGTGACGGGGAGAGCGGTGAGGAGTTTACAGACGGTGATTTCGATGATACAGATGATGATACAGTTGTGATTGCAAGCGAGAGATCCACAAAACAATCTGTTCCCGTAAACGAAACGCTAAACTTGGAAATAAGCAAGGTGAACGTTGATTTGAATGGGAAAGTACATGATAACGGCTTGAGTGATGCAGCGAATGGTTCCAAAGATGCGGCCAAGGTCAACGGTGTCTCTAGCAATGGAGATAATAAAATTCTAGAAAGAAAAGATTCCAATTCCGAACAGAATCCATCCATCGTAGGAATTCTAGGAGATCAACAGAACCATGCGGAGCAAAGGTTGGCGGCTCGAAGGGCCGCGAGGGCGGAGGCGCGTGAGATACGCATGCGTGAACTGGAACGTCAGCAGCGCGAACAAGAAGACCATGCCGATAAAGCGTACGACATGATGACAGAAAGCGTAGGTCGCCGTGGTGGCACGCGGCTGGCGGCTCTAAGTCCCGGAGGGTTACATTCGCCGCGACGGAGTTCTGAAGACTCGGCGGACGATGTCTTCAGCATCAAAGACCTTAGGCACGAATTAAAAGAAGTTGAAGAGAAGTTTCGGAAGGCGATGATCTTAAATGCTCAGTTAGATAATGATAAAGCGGCGCTCGGTTACCAGCTCGAGCTACTCAAGGACAGGATAGAAGAACTCCACGAGGAATACGCACAATTACAGCGGGAGCACAAGGAGAAGTGTTCGGCGCACGAGCGCTTAAAGCGCGAGCAGGTGTCGCTGGAGCGCGAGCTGGCGGCGGCGCGCGACGCGGTGCGGGCGCGAGATGCGGCCGCGGCCGCCGCCGGCCTCGCGTTCGTCGAAGCTGGCGAGGGCGAGCCCTTCGGCGCCGTTCCCGCGCTCGCGCTCATCTCGCACCAGTCGGAGCGGCTGCTGGACGGCGCCGGCGAGGGCACGCTGGACGTGCGGCTGCAGCGGCTGCTGGCCGCTAAGACGGCGCTCGAGTCGGACGTGCGCAAGCTCAAGTTGCAGCTGAACGAGGAGCGGCAGGCGCGCCAGAACGGCGTGGCGCATCGCCTCGACGCCGAGTACGAGGGCGAGGTGGAGGCGCTGCGCAAGTGCGTGGCGGAGGCGAAGGCGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCCGTCGCGCGCCTCGAAGCGCAGGCGGCGAGGCTGCGCGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGGTTGCAGCGCGAGGCTCGCGACGCCCTCAATCGAGTCGAAGAGTTGGAAACGGAGAACAGCCACCTGACGAAGCGGCTGGACAAGTTGAAGAACGCCAAGTCAGCTCTCCTCAAAGACCTATGA
- Protein Sequence
- MGNKSKFATPANSDGESGEEFTDGDFDDTDDDTVVIASERSTKQSVPVNETLNLEISKVNVDLNGKVHDNGLSDAANGSKDAAKVNGVSSNGDNKILERKDSNSEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMMTESVGRRGGTRLAALSPGGLHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREQVSLERELAAARDAVRARDAAAAAAGLAFVEAGEGEPFGAVPALALISHQSERLLDGAGEGTLDVRLQRLLAAKTALESDVRKLKLQLNEERQARQNGVAHRLDAEYEGEVEALRKCVAEAKARAARAEAEAALQAAAVARLEAQAARLRARQDHQDEHEEQLKQERRRLQREARDALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388487;
- 90% Identity
- iTF_01388487;
- 80% Identity
- -