Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010000625.1:39865-43826[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.4 2.1e+03 -0.9 0.0 26 45 426 445 421 451 0.88

2 10 0.00046 2.4 8.6 0.0 23 44 567 588 564 594 0.91

3 10 0.0028 14 6.0 0.0 20 49 620 649 617 651 0.91

4 10 0.00043 2.2 8.7 0.1 27 49 655 677 652 680 0.92

5 10 0.02 1e+02 3.3 0.0 27 49 683 705 679 709 0.92

6 10 0.024 1.2e+02 3.1 0.0 27 49 711 733 709 735 0.92

7 10 0.00036 1.8 8.9 0.2 27 49 739 761 736 765 0.92

8 10 0.00051 2.6 8.4 0.1 27 49 767 789 762 792 0.94

9 10 1.3 6.9e+03 -2.5 0.0 27 48 795 816 794 818 0.88

10 10 0.18 9.5e+02 0.2 0.0 27 47 823 843 820 846 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.4	2.1e+03	-0.9	0.0	26	45	426	445	421	451	0.88
2	10	0.00046	2.4	8.6	0.0	23	44	567	588	564	594	0.91
3	10	0.0028	14	6.0	0.0	20	49	620	649	617	651	0.91
4	10	0.00043	2.2	8.7	0.1	27	49	655	677	652	680	0.92
5	10	0.02	1e+02	3.3	0.0	27	49	683	705	679	709	0.92
6	10	0.024	1.2e+02	3.1	0.0	27	49	711	733	709	735	0.92
7	10	0.00036	1.8	8.9	0.2	27	49	739	761	736	765	0.92
8	10	0.00051	2.6	8.4	0.1	27	49	767	789	762	792	0.94
9	10	1.3	6.9e+03	-2.5	0.0	27	48	795	816	794	818	0.88
10	10	0.18	9.5e+02	0.2	0.0	27	47	823	843	820	846	0.92

Sequence Information

Coding Sequence: ATGATCAGAGCATGGTGTCCCAGTGTAATGTTCTCATATATGTTAACGTCATCTGCCAACTCCAGCTCCATGATGGGATATGTCGTTCCATTTGCAGACACAGCTCCGGTCACAGATGTATGTGGATTGCTAAGGAATAATATTGCGAGACTGAAAGTTCCAAGATCTGGAGCAATCTCCTTCCACTTAGATCTTTCTGAATATCAGCCCACCGCCACTCATAAGTTTGTACCCTCCAAGGACGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCGACGGAATTTAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCCGTGCTAGACTTGGCGGGTTCACTGCAGTGACCCCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAGTAACACGGGTGTAATAAATAAGGTTTCAGACGAAGAGTGCAACAAAGAGGGCAAAGTTGAAGAAAGCGGAAACAAATTAGATGAAACCTCGAGTGAATCTGAAGGACCATTTATAGCAGACAACATAAAAGTTGAAACAAAAGAGATGGTCAACGATGAAGACTCAAGTATAAATAATTTAATAGAAGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATAAATAATTTTTTAGATGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGTATAAATAATTTATTAGATGAAGAGTTCAATGAAGAGGTTAGAAATGAAGACTCAAGTATAAATAAGGTATTAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATAAATAATTTTATAGAAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGTATAAATAATTTATTAGATGAAGAGTTCAATGAAGAGGTTAGAAATGAAGACTCAAGTATAAATAATATTTTAGATGAAGAATTCAATGAAGATGTCAAAAATGAAGACTCAAGTATAAATAATTTTATAGAAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGTATAAATAATTTATTAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGATTCAAGTGTAAATAATTTTATAGAAGAAGAGTTCATTGAAGATGTCAGAAATGAAGACACAAGTATAAATAAGGTTTTAGATGAAGAGTTTAATGAAGAGAGTGAAATGAAATCAGATGAAACCTTTAGTGATGCTGGTGTTGGTTTAAGAAAAGCAAGCGACATACATGAGTATAAATGCAACATTTGCAATAAAACTTTTAAACGCAAAGTGAACCTAGAAAATCACGTCAAAACTCACGACGGTTCTAAACGCCAATCATGTCCAGAAATACTATCGAATAAGAGAAAAAACACAAAGTATATAGCTAAACACCATCAGTTGAAGGTTCACATGGACAGACAGACACATGGGTGCCAAGAGTGCGGTCGGAGATTCACAGACAAGAGTAATTTACTAAGGCATTGTCGAGAGGTGCACATGGGTGTAAAAAAGTACAGTTGCCAGTATTGCAATAAAAGACTTAGGACGAAACAGTACTTGGTTAAACATGAAAAGACACACACGGGTGTAAAATCGTATGTGTGCGAAAAATGCGATAAACCGTTTCACAGTAAAGAGGGTTTACTGGATCATAATGCAGTGCATTTGAAATATAAGCCTTTAACTTGTAACGTATGTGATAAAGTATTCATGAAGAAAAATAATTTAAACAGACACATGTTGACGCATACTGGGGTGAAATCTTTCCAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATCATTTTAATGATCACATGAAGGTTCATACGAGCGAAAGTCCTTACAAATGCGACATTTGCAAGAAGACATTTAAATACAATCAGAGTTTTAACAGACACATGTCGTTTGTACATTTGGGCCTTAAGCTTGACTGCTACATTTGCAAGAAAGTATTTAAACACAAAAGGAACTTAAGCAAGCACATGTCGGTTGTACATTTAGGCTTTAAGCTTGAGTGCGACATATGCAAGAAAACATTTAAATACAAAAAGAATTTAAGCAAGCACATGTCGGTTGTACATTTAGGCTTTAAGCTTGAGTGCGACATATGCAAGAAAACATTTAAATACAAAAAGAATTTAAGCAAGCACATGTCGGTTGTACATTTAGGATTTGGGCTTGAGTGCGACATATGCAAGAAAACATTTAAATACAGAAGGAATTTAAGGAAGCACATGTCGGTTGTACATTTGGGCTTTAAGCTTGAGTGCGACATATGCAAGAATACATTTAAACACAAAAGGAATTTAATCAAGCACATGTCGGTTGTACATTTTGGCTTTAAGCTTGAGTGCGACATATGCAAGAAGACATTTAAATACAAACAGAGTTTAACGGAGCACATGTCGGTTGTGCATTTGGGCTTTAAGCATGACTGCGACATTTGCAAGAAGACATTTAAATACAAAAAGTATTTTAGGAAGCACATGTCTGTTAGGGGTTGTAAATCCCTTAAATAG
Protein Sequence: MIRAWCPSVMFSYMLTSSANSSSMMGYVVPFADTAPVTDVCGLLRNNIARLKVPRSGAISFHLDLSEYQPTATHKFVPSKDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARLGGFTAVTPDMKQETSEDEDSNTGVINKVSDEECNKEGKVEESGNKLDETSSESEGPFIADNIKVETKEMVNDEDSSINNLIEEEFNEDVRNEDSSINNFLDEEFNEDVKNEDSSINNLLDEEFNEEVRNEDSSINKVLDEEFNEDVRNEDSSINNFIEEEFNEDVKNEDSSINNLLDEEFNEEVRNEDSSINNILDEEFNEDVKNEDSSINNFIEEEFNEDVKNEDSSINNLLDEEFNEDVRNEDSSVNNFIEEEFIEDVRNEDTSINKVLDEEFNEESEMKSDETFSDAGVGLRKASDIHEYKCNICNKTFKRKVNLENHVKTHDGSKRQSCPEILSNKRKNTKYIAKHHQLKVHMDRQTHGCQECGRRFTDKSNLLRHCREVHMGVKKYSCQYCNKRLRTKQYLVKHEKTHTGVKSYVCEKCDKPFHSKEGLLDHNAVHLKYKPLTCNVCDKVFMKKNNLNRHMLTHTGVKSFQCSVCSKSFARKDHFNDHMKVHTSESPYKCDICKKTFKYNQSFNRHMSFVHLGLKLDCYICKKVFKHKRNLSKHMSVVHLGFKLECDICKKTFKYKKNLSKHMSVVHLGFKLECDICKKTFKYKKNLSKHMSVVHLGFGLECDICKKTFKYRRNLRKHMSVVHLGFKLECDICKNTFKHKRNLIKHMSVVHFGFKLECDICKKTFKYKQSLTEHMSVVHLGFKHDCDICKKTFKYKKYFRKHMSVRGCKSLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387800;
90% Identity: iTF_01387800;
80% Identity: iTF_01387800;