Smyo010958.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Synanthedon myopaeformis
Gene Symbol
-
Assembly
GCA_944738625.1
Location
CALYFO010000625.1:39865-43826[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 3.2e-08 1.9e-06 28.2 2.4 1 23 425 447 425 447 0.99
2 14 9.4e-05 0.0055 17.3 2.9 3 23 486 507 486 507 0.90
3 14 0.00018 0.011 16.4 3.6 1 23 513 535 513 535 0.98
4 14 0.0006 0.035 14.8 0.4 1 23 541 563 541 563 0.95
5 14 4.9e-07 2.9e-05 24.5 1.3 2 23 570 591 569 591 0.97
6 14 9.1e-07 5.3e-05 23.6 3.3 1 23 597 619 597 619 0.99
7 14 1.2e-05 0.00069 20.1 3.7 1 23 625 648 625 648 0.94
8 14 9.3e-06 0.00055 20.4 2.5 3 23 655 676 653 676 0.95
9 14 1.2e-06 6.7e-05 23.3 1.3 2 23 682 704 681 704 0.95
10 14 1.2e-06 6.7e-05 23.3 1.3 2 23 710 732 709 732 0.95
11 14 8.2e-07 4.8e-05 23.8 1.4 2 23 738 760 737 760 0.95
12 14 1.8e-05 0.001 19.6 1.8 2 23 766 788 765 788 0.95
13 14 5.3e-06 0.00031 21.2 0.7 2 23 794 816 793 816 0.95
14 14 0.00012 0.0068 17.0 3.4 1 21 821 841 821 842 0.93

Sequence Information

Coding Sequence
ATGATCAGAGCATGGTGTCCCAGTGTAATGTTCTCATATATGTTAACGTCATCTGCCAACTCCAGCTCCATGATGGGATATGTCGTTCCATTTGCAGACACAGCTCCGGTCACAGATGTATGTGGATTGCTAAGGAATAATATTGCGAGACTGAAAGTTCCAAGATCTGGAGCAATCTCCTTCCACTTAGATCTTTCTGAATATCAGCCCACCGCCACTCATAAGTTTGTACCCTCCAAGGACGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCGACGGAATTTAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCCGTGCTAGACTTGGCGGGTTCACTGCAGTGACCCCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAGTAACACGGGTGTAATAAATAAGGTTTCAGACGAAGAGTGCAACAAAGAGGGCAAAGTTGAAGAAAGCGGAAACAAATTAGATGAAACCTCGAGTGAATCTGAAGGACCATTTATAGCAGACAACATAAAAGTTGAAACAAAAGAGATGGTCAACGATGAAGACTCAAGTATAAATAATTTAATAGAAGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATAAATAATTTTTTAGATGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGTATAAATAATTTATTAGATGAAGAGTTCAATGAAGAGGTTAGAAATGAAGACTCAAGTATAAATAAGGTATTAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGACTCAAGTATAAATAATTTTATAGAAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGTATAAATAATTTATTAGATGAAGAGTTCAATGAAGAGGTTAGAAATGAAGACTCAAGTATAAATAATATTTTAGATGAAGAATTCAATGAAGATGTCAAAAATGAAGACTCAAGTATAAATAATTTTATAGAAGAAGAGTTCAATGAAGATGTCAAAAATGAAGACTCAAGTATAAATAATTTATTAGATGAAGAGTTCAATGAAGATGTCAGAAATGAAGATTCAAGTGTAAATAATTTTATAGAAGAAGAGTTCATTGAAGATGTCAGAAATGAAGACACAAGTATAAATAAGGTTTTAGATGAAGAGTTTAATGAAGAGAGTGAAATGAAATCAGATGAAACCTTTAGTGATGCTGGTGTTGGTTTAAGAAAAGCAAGCGACATACATGAGTATAAATGCAACATTTGCAATAAAACTTTTAAACGCAAAGTGAACCTAGAAAATCACGTCAAAACTCACGACGGTTCTAAACGCCAATCATGTCCAGAAATACTATCGAATAAGAGAAAAAACACAAAGTATATAGCTAAACACCATCAGTTGAAGGTTCACATGGACAGACAGACACATGGGTGCCAAGAGTGCGGTCGGAGATTCACAGACAAGAGTAATTTACTAAGGCATTGTCGAGAGGTGCACATGGGTGTAAAAAAGTACAGTTGCCAGTATTGCAATAAAAGACTTAGGACGAAACAGTACTTGGTTAAACATGAAAAGACACACACGGGTGTAAAATCGTATGTGTGCGAAAAATGCGATAAACCGTTTCACAGTAAAGAGGGTTTACTGGATCATAATGCAGTGCATTTGAAATATAAGCCTTTAACTTGTAACGTATGTGATAAAGTATTCATGAAGAAAAATAATTTAAACAGACACATGTTGACGCATACTGGGGTGAAATCTTTCCAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATCATTTTAATGATCACATGAAGGTTCATACGAGCGAAAGTCCTTACAAATGCGACATTTGCAAGAAGACATTTAAATACAATCAGAGTTTTAACAGACACATGTCGTTTGTACATTTGGGCCTTAAGCTTGACTGCTACATTTGCAAGAAAGTATTTAAACACAAAAGGAACTTAAGCAAGCACATGTCGGTTGTACATTTAGGCTTTAAGCTTGAGTGCGACATATGCAAGAAAACATTTAAATACAAAAAGAATTTAAGCAAGCACATGTCGGTTGTACATTTAGGCTTTAAGCTTGAGTGCGACATATGCAAGAAAACATTTAAATACAAAAAGAATTTAAGCAAGCACATGTCGGTTGTACATTTAGGATTTGGGCTTGAGTGCGACATATGCAAGAAAACATTTAAATACAGAAGGAATTTAAGGAAGCACATGTCGGTTGTACATTTGGGCTTTAAGCTTGAGTGCGACATATGCAAGAATACATTTAAACACAAAAGGAATTTAATCAAGCACATGTCGGTTGTACATTTTGGCTTTAAGCTTGAGTGCGACATATGCAAGAAGACATTTAAATACAAACAGAGTTTAACGGAGCACATGTCGGTTGTGCATTTGGGCTTTAAGCATGACTGCGACATTTGCAAGAAGACATTTAAATACAAAAAGTATTTTAGGAAGCACATGTCTGTTAGGGGTTGTAAATCCCTTAAATAG
Protein Sequence
MIRAWCPSVMFSYMLTSSANSSSMMGYVVPFADTAPVTDVCGLLRNNIARLKVPRSGAISFHLDLSEYQPTATHKFVPSKDDKIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARLGGFTAVTPDMKQETSEDEDSNTGVINKVSDEECNKEGKVEESGNKLDETSSESEGPFIADNIKVETKEMVNDEDSSINNLIEEEFNEDVRNEDSSINNFLDEEFNEDVKNEDSSINNLLDEEFNEEVRNEDSSINKVLDEEFNEDVRNEDSSINNFIEEEFNEDVKNEDSSINNLLDEEFNEEVRNEDSSINNILDEEFNEDVKNEDSSINNFIEEEFNEDVKNEDSSINNLLDEEFNEDVRNEDSSVNNFIEEEFIEDVRNEDTSINKVLDEEFNEESEMKSDETFSDAGVGLRKASDIHEYKCNICNKTFKRKVNLENHVKTHDGSKRQSCPEILSNKRKNTKYIAKHHQLKVHMDRQTHGCQECGRRFTDKSNLLRHCREVHMGVKKYSCQYCNKRLRTKQYLVKHEKTHTGVKSYVCEKCDKPFHSKEGLLDHNAVHLKYKPLTCNVCDKVFMKKNNLNRHMLTHTGVKSFQCSVCSKSFARKDHFNDHMKVHTSESPYKCDICKKTFKYNQSFNRHMSFVHLGLKLDCYICKKVFKHKRNLSKHMSVVHLGFKLECDICKKTFKYKKNLSKHMSVVHLGFKLECDICKKTFKYKKNLSKHMSVVHLGFGLECDICKKTFKYRRNLRKHMSVVHLGFKLECDICKNTFKHKRNLIKHMSVVHFGFKLECDICKKTFKYKQSLTEHMSVVHLGFKHDCDICKKTFKYKKYFRKHMSVRGCKSLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01388129;
90% Identity
iTF_01388129;
80% Identity
iTF_01388129;