Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010000351.1:341818-346194[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00042 0.024 15.2 0.0 2 23 9 31 8 31 0.92

2 16 6.7 3.9e+02 2.0 0.0 2 23 56 78 55 78 0.88

3 16 0.96 56 4.7 1.7 2 23 101 122 100 122 0.95

4 16 1.6e-05 0.00092 19.7 0.8 1 23 126 149 126 149 0.96

5 16 0.037 2.2 9.1 0.4 3 20 156 173 155 175 0.94

6 16 0.076 4.4 8.1 0.8 3 23 184 205 182 205 0.90

7 16 0.013 0.74 10.6 1.3 1 23 212 235 212 235 0.95

8 16 1.6 95 4.0 0.4 3 23 281 302 279 302 0.90

9 16 0.32 19 6.2 1.1 2 23 372 393 371 393 0.96

10 16 8.2e-05 0.0048 17.5 0.6 1 23 397 420 397 420 0.97

11 16 0.0037 0.22 12.3 2.2 1 22 425 446 425 446 0.93

12 16 0.033 1.9 9.3 4.5 1 23 453 476 453 476 0.92

13 16 0.12 6.8 7.6 1.6 1 23 483 506 483 506 0.94

14 16 0.0005 0.029 15.0 0.7 2 23 512 533 511 533 0.96

15 16 7.7e-06 0.00045 20.7 0.3 1 19 539 557 539 561 0.96

16 16 0.0058 0.34 11.7 0.5 1 23 567 590 567 590 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00042	0.024	15.2	0.0	2	23	9	31	8	31	0.92
2	16	6.7	3.9e+02	2.0	0.0	2	23	56	78	55	78	0.88
3	16	0.96	56	4.7	1.7	2	23	101	122	100	122	0.95
4	16	1.6e-05	0.00092	19.7	0.8	1	23	126	149	126	149	0.96
5	16	0.037	2.2	9.1	0.4	3	20	156	173	155	175	0.94
6	16	0.076	4.4	8.1	0.8	3	23	184	205	182	205	0.90
7	16	0.013	0.74	10.6	1.3	1	23	212	235	212	235	0.95
8	16	1.6	95	4.0	0.4	3	23	281	302	279	302	0.90
9	16	0.32	19	6.2	1.1	2	23	372	393	371	393	0.96
10	16	8.2e-05	0.0048	17.5	0.6	1	23	397	420	397	420	0.97
11	16	0.0037	0.22	12.3	2.2	1	22	425	446	425	446	0.93
12	16	0.033	1.9	9.3	4.5	1	23	453	476	453	476	0.92
13	16	0.12	6.8	7.6	1.6	1	23	483	506	483	506	0.94
14	16	0.0005	0.029	15.0	0.7	2	23	512	533	511	533	0.96
15	16	7.7e-06	0.00045	20.7	0.3	1	19	539	557	539	561	0.96
16	16	0.0058	0.34	11.7	0.5	1	23	567	590	567	590	0.92

Sequence Information

Coding Sequence: ATGTGGCTCCCAGAAGAGTCCCTGGTGTGCGTTTACTGCGGTGAGAGTTACGATGAACCGTCCGAATACAGAAAACATATGGACGCGGACCACAAAAAGTTTAAAGTACGCTTGGCCTTCCTACATCTGAGCGAGGGTTATATTAAGGCGGATTGCACGGATCTAAGGTGTAGAATATGTTGGGTCTCCTTGGAGAATCTCGAGGAAACGGCCAAGCATTTGGTCAACGTTCACAATCGTAAGATTGATCTTAATGTCGATTTAGGACTTCAACCGTTCATGTTGGACAATGACAAGACAACATGTTACATTTGCGGCGCAAGATTGCCGTGTCTCCGCCAATTGAGTAGGCACACCCAAACACACTTCCTGAAGTATACGTGCGAATCGTGCGGGAAATCTTACGCGACAATATCCACCCTCCGTAATCATATAAAGTTTTCGCATATAAACCAGGAACGGATCTGTAGGAAATGTAGGAAGACCTTCCCCAGTCTAGAGGAGAGAAGGCGACATCTAACGGAGTCTGAGAAATGTTGGTCTCACTTGTGCAGCATGTGTTCAGAGAGGTTTGTATCGTGGACCTCCAAGCAAATTCATTTGACCGAAGCCCACAATGTTCCGAAGAAGACATACGTTTGTCCGGAGTGCAGGGAAGTGTTTTTCGAGAGGAAAAAGTATAGAGTGCATTTTAAGTTGCAGCACACGAACGAGACGGTTGACGGAGGATTTGTTTTTGTTCTAGCCAATCCGGCGCAGTCGGACGATCGTCGTAACGCAGAGATTATTGTAGCGAACACGACAGCTTATCCGTTCAGATTGCCTGAAGAAAGAATGATGTGCGTTTACTGTTGCGAGGAATATGCGGAAAGTGCTGAGTTCAGGAAACACATGGAGGATGAACACCAAGTGTTCAAATTGTATATGGCGTTTACTCATCTTCCTGACGGGATTGGGATGAAGGTTGACATCACTGATCTCCGATGTAGACTGTGTCAGACTCCCCACGAGACTCTAGAGGGGATCGCTGTACATCTAAACGAATATCACGACTGCGATTTGAATCTGAACAGCGATCTGAGCTTACAGCCGTTTAAGTTAGGGAAGAGGATGTCTTGTGCCATCTGTAGCCTCCCGTTTCCGTGTCTACGGTCTCTGAGTCGTCACACACAGACGCATTTCCTCAAGTACACGTGTGAATCTTGCGGCAAGTCTTACTCAACAATCACATCTTTGCAAGGGCACGTAAGGTATTCGCACATTAAAGGAAAATACTTATGCAGGAAGTGTAAAAAGACGTTCAGCACGTCAAACGAAAGACGGGAACATCTTAAGACGTCTACAAGGTGTTGTCAGCATTGCTGTTTCACTTGCAACAAACGTTTTGCGACGTGGAATTTGAAACTGAAGCACATGGAAGAGGTTCACGACAAACCTAGGAGAAGTTATCCATGCATTGAATGCGATATGGTTTTTAAGACTCGCGACACTTGTAGGGTGCATTTCAAGACCGTTCACACTGAGGATCACGTGACCTGCACAGTTTGCTCCCGGAAGTTTGATACGGAGCAGAAATTGAGTAAACATATGGTCGTACATACGGGTGATAAAAAGTTTGTGTGCGAGGTCTGCAACAAGTCTTTTCCGAGGAAGGCGAATTTGCGTCAGCACTCGTGGATTCATAGCGAAGTGAAAAGATTCGCGTGCGGTCCATGCAATAAGCAGTTTGCTCAACGCATCAGCTGGCGTACACACATGAAATCCTACCACCCAGAGTGGTCTAAAGAATATTAG
Protein Sequence: MWLPEESLVCVYCGESYDEPSEYRKHMDADHKKFKVRLAFLHLSEGYIKADCTDLRCRICWVSLENLEETAKHLVNVHNRKIDLNVDLGLQPFMLDNDKTTCYICGARLPCLRQLSRHTQTHFLKYTCESCGKSYATISTLRNHIKFSHINQERICRKCRKTFPSLEERRRHLTESEKCWSHLCSMCSERFVSWTSKQIHLTEAHNVPKKTYVCPECREVFFERKKYRVHFKLQHTNETVDGGFVFVLANPAQSDDRRNAEIIVANTTAYPFRLPEERMMCVYCCEEYAESAEFRKHMEDEHQVFKLYMAFTHLPDGIGMKVDITDLRCRLCQTPHETLEGIAVHLNEYHDCDLNLNSDLSLQPFKLGKRMSCAICSLPFPCLRSLSRHTQTHFLKYTCESCGKSYSTITSLQGHVRYSHIKGKYLCRKCKKTFSTSNERREHLKTSTRCCQHCCFTCNKRFATWNLKLKHMEEVHDKPRRSYPCIECDMVFKTRDTCRVHFKTVHTEDHVTCTVCSRKFDTEQKLSKHMVVHTGDKKFVCEVCNKSFPRKANLRQHSWIHSEVKRFACGPCNKQFAQRISWRTHMKSYHPEWSKEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386119; iTF_01388777;
90% Identity: iTF_01386119;
80% Identity: -