Stip015882.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392436.1:3351373-3357602[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00056 0.032 14.9 0.0 2 23 34 56 33 56 0.92 2 19 1.6 96 4.0 1.9 2 23 126 147 125 147 0.95 3 19 2.1e-05 0.0012 19.4 0.8 1 23 151 174 151 174 0.96 4 19 0.04 2.3 9.1 0.3 3 20 181 198 180 200 0.93 5 19 0.085 5 8.1 0.6 3 23 209 230 207 230 0.90 6 19 0.029 1.7 9.5 1.3 1 23 237 260 237 260 0.94 7 19 0.059 3.5 8.5 2.8 1 23 265 287 265 287 0.96 8 19 8.5e-06 0.00049 20.7 1.2 1 20 293 312 293 315 0.94 9 19 6.1e-05 0.0035 18.0 2.3 1 23 321 344 321 344 0.97 10 19 1.6 94 4.0 0.5 3 23 411 432 409 432 0.90 11 19 5.6 3.3e+02 2.3 0.1 2 16 478 492 478 493 0.81 12 19 0.75 44 5.1 1.1 2 23 502 523 501 523 0.95 13 19 0.00011 0.0064 17.2 0.6 1 23 527 550 527 550 0.97 14 19 0.06 3.5 8.5 1.0 1 21 555 575 555 576 0.92 15 19 0.044 2.6 9.0 4.5 1 23 583 606 583 606 0.92 16 19 0.27 16 6.5 1.1 1 23 613 636 613 636 0.92 17 19 0.00066 0.039 14.7 0.7 2 23 642 663 641 663 0.96 18 19 2.4e-05 0.0014 19.3 0.3 1 19 669 687 669 691 0.95 19 19 0.0077 0.45 11.3 0.5 1 23 697 720 697 720 0.92
Sequence Information
- Coding Sequence
- atgaaagAACTCGATGACTATGTGATCGCGAAACGGAACGCCGAGATTATCGTGGAAAACGCGACAGCGTACCCGTTCAGGCTCCCAGAAGAGTCACTGGTGTGCGTTTACTGCGGTGAGAGTTACGATGAACCGTCCGAGTACAGAAAACATATGGACGCGGACCACAAAAAGTTTAAAGTGCGCTTGGCCTTTTTGCATCTGAGCGAGGGTTATATTAAGGCGGATTGCACAGATCTAAGGTGTAGATTATGTTGGATCTCCTTGGAGAATCTCGTGGAGACTGCTAAGCATTTGGTCAACGTGCACAATCGTAAAATCGATCTTAACGTAGATTTAGGACTTCAACCGTTCATGTTGGACAACGACAAGACAACTTGTTACATTTGCGGCGCAAGATCTCCGTGCCTCCGACAACTGAGTAGGCACACCCAAACACACTTTCTGAAATATACGTGCGAATCGTGCGGGAAATCTTACGCGACAATATCAACCCTCCGTAATCATATAAAGTTTTCGCACGTAAACCAGGAACGGATCTGTAGGAAATGTAGGAAGACCTTTCCCAGTCTAGAGGAGAGGAGGCGACATCTGATCGAGTCTGAGAAATGTTGGTCTCACTTGTGCAGCGTGTGCTCGGAGAGATTTGTGTCGTGGACGTCCAAGCAAATTCACTTGACCGAAGCGCACAATGTACCGAAGAAGACGTACATATGTCCGGAGTGCAGGGAGGTGTTTTTCGAGAGGAAAAAGTATAGAGTGCATTTTAAGTTGCAGCACACGAACGAGGTTTATACGTGTTCGTGCTGTAGCCTAAAGTTCGAGACGAAGCGTAATTTGGAGGAGCACCGTGTGGTGCACACCAAagagaaactgtttgagtgcacggtttgtttcaaatcgtttccaagaaagaaaaatttgacacagcacatgtggattcacagcgaagtgaagaggttcgagtgcacactgtgcaacaagcagttcaatcagagggtcagttggaaaacgcacatgaagtcgtaccaTCCCGAGCTTGTTGACTTTGAGGAATGGGGTGCTAAGAAAAAGACACCATTTCAACATTTGACAAACGTTCAACAAACGGTTGACGGATTTGTTTTTGTTCTAGCCAATCCGGCGCAGTCGGACGATCGTCGTAACGCAGAGGTTATTTTAGCGAACACGACAGCTTATCCGTTCAGATTGCCCGAAGAAAGAATGATGTGCGTTTACTGTTGCGAGGAATTTGGGGAAAGTGCCGAGTTCAGGAAACACATGGAGGATGAACACCGAGTGTTCAAATTGTATATGGCGTTCACTCATCTTCCCGACGGGATTGGGATGAAGGTCGACATCACTGATCTGCGATGTAGACTGTGTCAGATTCCCCACGAGACTCTGGAGGGGATCGCTGCGCATCTAAACGAATGTCACGATTGCGATTTGAATCTGAACAGCAATATCAGCTTACAGCCGTTTAAGTTGGGGAAGAGGATGTCTTGTGCCGTCTGTAGCCTCCCGTTTCCGTGTCTACGGTCTCTGAGTCGTCACACACAGACGCACTTCCTCAAGTACACGTGTGAATCTTGCGGCAAATCTTACTCAACAATCACATCTTTGCAAGGGCACGTGAGATATTCGCACATTAAAGGCAAATACTTATGCAGGAAGTGTAAAACGACGTTCAGCACGCTAAACGAAAGACGGGAACATCTAAAGATCTCTACGCAGTGCTGTCAGCACTGCTGTTTCACTTGCAACAAACGTTTCGCGACGTGGAATTTGAAATTGAAGCATATGGAAGAGGTTCACGGCAAACGTAGGAGGATTTATCCGTGCATTGAATGCGATATGGTTTTTAAGACTCGCGACACATGCAGGGTGCACTTCAAGATCGTCCATACTGAGGATCACGTGACGTGCACAGTTTGCTCCCGCAAGTTCGATACGGAGCAGAAATTGAGTAAAcacatggtcgtgcatacgggtgataaaaagtttgcgtgcgacgtgtgcaacaagtcttttccgcggaaggcgaatttgcgtcagcactcgtggattcatagcgaggtgaagaggttcgcgtgcggtccgtgcaacaagcagtttgcacaaCGCATAAGCTGGCGTACGCACATGAAATCCTACCACCCAGAGTGGTCTAAAGAATATTAG
- Protein Sequence
- MKELDDYVIAKRNAEIIVENATAYPFRLPEESLVCVYCGESYDEPSEYRKHMDADHKKFKVRLAFLHLSEGYIKADCTDLRCRLCWISLENLVETAKHLVNVHNRKIDLNVDLGLQPFMLDNDKTTCYICGARSPCLRQLSRHTQTHFLKYTCESCGKSYATISTLRNHIKFSHVNQERICRKCRKTFPSLEERRRHLIESEKCWSHLCSVCSERFVSWTSKQIHLTEAHNVPKKTYICPECREVFFERKKYRVHFKLQHTNEVYTCSCCSLKFETKRNLEEHRVVHTKEKLFECTVCFKSFPRKKNLTQHMWIHSEVKRFECTLCNKQFNQRVSWKTHMKSYHPELVDFEEWGAKKKTPFQHLTNVQQTVDGFVFVLANPAQSDDRRNAEVILANTTAYPFRLPEERMMCVYCCEEFGESAEFRKHMEDEHRVFKLYMAFTHLPDGIGMKVDITDLRCRLCQIPHETLEGIAAHLNECHDCDLNLNSNISLQPFKLGKRMSCAVCSLPFPCLRSLSRHTQTHFLKYTCESCGKSYSTITSLQGHVRYSHIKGKYLCRKCKTTFSTLNERREHLKISTQCCQHCCFTCNKRFATWNLKLKHMEEVHGKRRRIYPCIECDMVFKTRDTCRVHFKIVHTEDHVTCTVCSRKFDTEQKLSKHMVVHTGDKKFACDVCNKSFPRKANLRQHSWIHSEVKRFACGPCNKQFAQRISWRTHMKSYHPEWSKEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387882;
- 90% Identity
- -
- 80% Identity
- -