Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010000351.1:335635-340684[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.14 8 7.3 0.6 2 23 26 48 25 48 0.89

2 28 0.38 22 6.0 0.0 2 23 72 94 71 94 0.93

3 28 0.3 17 6.3 0.1 2 23 117 138 116 138 0.94

4 28 0.071 4.1 8.2 4.4 2 21 143 162 142 165 0.92

5 28 3.8 2.2e+02 2.8 0.5 2 21 170 189 170 190 0.92

6 28 1.8 1e+02 3.8 4.4 1 23 197 220 197 220 0.94

7 28 0.75 44 5.0 0.7 1 13 227 239 227 241 0.87

8 28 0.52 31 5.5 0.3 3 23 292 313 291 313 0.97

9 28 1.3 78 4.2 0.1 2 23 338 360 337 360 0.89

10 28 0.00024 0.014 16.0 0.4 3 23 384 404 383 404 0.98

11 28 0.00091 0.053 14.2 2.1 1 21 408 428 408 429 0.96

12 28 1.6 91 4.0 0.3 1 23 470 493 470 493 0.94

13 28 0.55 32 5.4 0.2 2 23 519 541 518 541 0.95

14 28 0.018 1 10.1 0.7 2 23 564 585 563 585 0.94

15 28 0.00035 0.021 15.5 0.0 1 23 589 612 589 612 0.97

16 28 0.69 40 5.1 0.5 1 23 616 639 616 639 0.97

17 28 1.9 1.1e+02 3.7 0.4 1 23 644 669 644 669 0.91

18 28 0.067 3.9 8.3 0.3 3 23 728 749 726 749 0.95

19 28 0.081 4.7 8.1 0.1 2 23 773 795 772 795 0.95

20 28 0.00098 0.057 14.1 0.4 2 23 819 840 818 840 0.96

21 28 0.038 2.2 9.1 0.5 1 21 844 864 844 865 0.94

22 28 0.65 38 5.2 0.2 1 23 906 929 906 929 0.95

23 28 0.24 14 6.6 0.1 2 23 955 977 954 977 0.95

24 28 0.017 1 10.2 1.2 2 23 1001 1022 1000 1022 0.94

25 28 0.00021 0.013 16.2 0.0 1 23 1026 1049 1026 1049 0.97

26 28 0.019 1.1 10.0 1.2 1 23 1053 1076 1053 1076 0.98

27 28 0.14 7.9 7.4 5.9 1 22 1115 1136 1115 1138 0.88

28 28 0.032 1.9 9.3 0.3 1 23 1148 1171 1148 1171 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.14	8	7.3	0.6	2	23	26	48	25	48	0.89
2	28	0.38	22	6.0	0.0	2	23	72	94	71	94	0.93
3	28	0.3	17	6.3	0.1	2	23	117	138	116	138	0.94
4	28	0.071	4.1	8.2	4.4	2	21	143	162	142	165	0.92
5	28	3.8	2.2e+02	2.8	0.5	2	21	170	189	170	190	0.92
6	28	1.8	1e+02	3.8	4.4	1	23	197	220	197	220	0.94
7	28	0.75	44	5.0	0.7	1	13	227	239	227	241	0.87
8	28	0.52	31	5.5	0.3	3	23	292	313	291	313	0.97
9	28	1.3	78	4.2	0.1	2	23	338	360	337	360	0.89
10	28	0.00024	0.014	16.0	0.4	3	23	384	404	383	404	0.98
11	28	0.00091	0.053	14.2	2.1	1	21	408	428	408	429	0.96
12	28	1.6	91	4.0	0.3	1	23	470	493	470	493	0.94
13	28	0.55	32	5.4	0.2	2	23	519	541	518	541	0.95
14	28	0.018	1	10.1	0.7	2	23	564	585	563	585	0.94
15	28	0.00035	0.021	15.5	0.0	1	23	589	612	589	612	0.97
16	28	0.69	40	5.1	0.5	1	23	616	639	616	639	0.97
17	28	1.9	1.1e+02	3.7	0.4	1	23	644	669	644	669	0.91
18	28	0.067	3.9	8.3	0.3	3	23	728	749	726	749	0.95
19	28	0.081	4.7	8.1	0.1	2	23	773	795	772	795	0.95
20	28	0.00098	0.057	14.1	0.4	2	23	819	840	818	840	0.96
21	28	0.038	2.2	9.1	0.5	1	21	844	864	844	865	0.94
22	28	0.65	38	5.2	0.2	1	23	906	929	906	929	0.95
23	28	0.24	14	6.6	0.1	2	23	955	977	954	977	0.95
24	28	0.017	1	10.2	1.2	2	23	1001	1022	1000	1022	0.94
25	28	0.00021	0.013	16.2	0.0	1	23	1026	1049	1026	1049	0.97
26	28	0.019	1.1	10.0	1.2	1	23	1053	1076	1053	1076	0.98
27	28	0.14	7.9	7.4	5.9	1	22	1115	1136	1115	1138	0.88
28	28	0.032	1.9	9.3	0.3	1	23	1148	1171	1148	1171	0.95

Sequence Information

Coding Sequence: ATGGCCCGAGGGAATGCTTTGGCTGTGTTGCGAAATTGTTTTCTTTATCCACTCAGGATTATCGGGAAGATTATCAAGTGCTACTATTGTTTGGAAAAATTTGACGATCCTAAAGATTTTAGGGAACATTTTGATCAAGAACACAAGACTAGTGTATGGGAAAAGCATATGTTCATCAAGAAGACCACTGTTAAAGTGGATCTAACATGTTTGAACTGTAAAATTTGTTCAGAGCCTTTTCAAAGCCTTATAGACGTAGCGGTACATCTAAAAGAAGAGCACACCGTTGATATAAACTTTAAGTACGACTTGGGATTGCATCCGTTCAAATTGGACTCGAGTAAGTGGGAGTGTGCTATATGTCAAGAGAAACTACCCTCACTGACGAAGCTAGCCAGACACACGACGCTTCATTACATGAATTGTACGTGTGAATTGTGCGGACGAAGTTACATGACGAAAGAAGCGTTGAAGTACCATAAAAAATGTGCTCACACTGAGACAAATGTCTGCAGGAAATGTTGGAGTACATTTTCCAGTACCAATGAAAAGAGGGAGCATTTGAAAGTGTCGAAAAAGTGCTGGCCATTCTGTTGTAACATATGCAAAGAACGCTTTATGTCTTATGAAAAGAAAAGTATGCATCAGAAGAATGTTCACAGGCTCAAAGAAAATACGCACTCGTGTCCCGAATGCTCGAAACAATTTGAGTCGAGGCGGACCACATTGGAAATACGCGGACGTAGCGAATGCGACACAGATACAAAACAGAAAATAGTACTTGTATACAAAACCCCGCAGCGCCGCAACGCGGAAATAGTATTGAGATATTCGTCCGCTTATCCATTTAAGACCAGATTTACCCAAATTCTCTGCGCGTATTGTCACGACGAATTCAATCCCTTAGCCGACCTTAGGTATCATGTAAAAACTGAACACGTCACATCGGATTTTAAAAATGTTTTCTACCGTACAAACGATAATCTCATTAAAGTAGATATAACTGATTTAAAATGTAAAATATGCGATGTAGAAATACAAGACATTGACACATTAATGAATCATTTGTACGAAGAGCACCGAAAGCCGGTAAAATTCGACGCGCGTTTCGGTGTGTTGCCCTACAAACAGAACGGAGACGATTGGCTATGCGTTTACTGCCAAAAGGTCTTCGCAGACTTTGTAAATTTTAACAGACACATATCTAGTCACTTTATGCATTTCAGTTGCGAGAAATGCGGTACGACATTCGTTTCTGATCACCAATTGCGCGATCACCACCGCCAAGTGAAATGTTTCAGAACTGCTTACAAACCGCGCAACGGGCGCGCGTTGATACCCAGAAGTAATGCCGAAGTAATTCTTCAATGTTCAACAGCATGTCCTTTTAGAACTTGGAAAACCAATTTCAATTGTGTTTTCTGTCGAGTGCAATCCTATGATCCAGTTAGTTTGCGGACTCACGTGGCTACAAGACACCCAAATTTCGATGTGCAAGACGCGTTTTATAAGAAGTTAGGCAAGGAGTTTCTTAAAATTGATATAACTGATCTTCAATGTAAACTTTGCTTCATGCCTATAAACAATCTCGAAGCTCTCACATATCATTTGAAAAATGACCACCAACAGCCAATTTCTGATGCACAACTAGGAGTTGTGCCGTTCAATTTGAACGACGGTTCGATATGGAAATGCACAATGTGTCCGAACGAATTTAAAGATTACGTGTCCCTCAGCAAGCATACGTTTGAACACTTTCAGAACTATGTTTGTGATACTTGCGGTGAGGGTTTTATTACGGAATCGGCGATGATAGCTCATACGAAAGTGCCACACGAGAACAAGTACAATTGCAGTCGTTGCATAGCGACTTTCTCATCGCTCGACGAAAGAAATATCCATGTTAAAACACAGCACACATCGATGCCTTACATGTGTGTGTACTGTAATGATAAACCCCGATTTTCTAACTGGGAATTGAGGAAAAAACATCTATTGGAGGTTCACAATTATAAGACTGGACCGAGAAAGGATATAGACGAACTCGTAGAGAAAGAGAGTAAACCAAAAAAGAGACTATTCGAAAGATCCGTCAACCAGAATCCACATCGGAAAAACGCTGTATTAATTCTTAGACATTCGACAGCTTTCCCCTTTAAAACACGCTTCAACCGAATAATATGTTCTTATTGTCACGACGAATTTAAACCGATGGCGGCATTGAGAAGCCACATCAAGAGTGACCACTCTAATGCTGATTTCAACAGCGCCTTTTACAAGGTCGTAGACGAATTGAAAATCGACATAACAGAACTCAAATGCAACATTTGTAACCAAGAAATACCAAGTGTGGATACTCTTATGACACATTTGTCGAAGGATCACAGTAAATCTGTCAACTTTGATGTCCCATTTGGGGTATTCCCTTATAGACAAGGTTCGAATGGTTACTGGATGTGCTTAGAGTGCGACAAGACGTTTCCTGATTTCCGTCAAATCAATAGCCATGTGCGTCGACACGTGAAGAGTTTCACTTGCGACAAATGCGGTGCTACGTTTCTATCTGAACACGGTTTGAAACAGCATGAACGTAACTTTAAATGTTATAAAGCAACATACAAGCCCAGATATGGGAAAGCTCTCAAGCATAGAAGCAACGTGGAAATCATTCTCCAATGTTCAACGGCGTCTCCTTTCCGAACTTGGGGCCAGAATTTCAATTGCGTATTTTGTCGGGTACAATCAAACGATCCGGTCGGCTTGCGTACTCACATGGCTTCACGCCATGCCGATTTCGATATTCAAATGGTTTTCAGTAGGAAATTGAGGAAGGAATTCTTGAAAGTGGATATAACTGATCTTCAATGTAAACTTTGTTTTATACGGATTGAAAATTTGGATGATTTGTTGGCTCATCTGAAGAACGATCATAAGCAACCGATCAACGCTGATGTTCAGCCAGGCGTGTTGCCGTTCAAACTGAACGACGGGTCGGTGTGGAAATGTGCGATCTGCTCCCACCAGTTCTCCGATTTTATATCGCTGAAGAAACACACGGCGGAACACTTTCAGAATTACGTTTGCGACACATGCGGGGAGGGTTTCATAACTGAGACAGCGTTGATCGCTCACACGAAGATACCGCACGACAACAAATACACGTGCAGCAGATGTGTAGCAACATTCACGACACTAGAAGAGAGGAAGTTACATTTGAAAACTCAACACACAACACTACCTTACATGTGCGTGTACTGTAAGGAGAAACCAAGGTTCGGCACTTGGGAGTTGAGGAGGAGACACCTGATGGAGTTTCACAATTATAAGCCGGGCGCTGAAATGTACGAGTGTACCACTTGTCATATGACATTTAAAACTAGATCTCAAAAGTATCATCACAATGTTAAAGTGCATAGAACAAAGACTGAGACAGAGTACAATTTCCCTTGCGCCAGTTGCTCCAGAGCGTTCGCTACTAAGTTGTCTTTAGACAAACATGTGGCAAAGAAGCATTTTCACGTTTAA
Protein Sequence: MARGNALAVLRNCFLYPLRIIGKIIKCYYCLEKFDDPKDFREHFDQEHKTSVWEKHMFIKKTTVKVDLTCLNCKICSEPFQSLIDVAVHLKEEHTVDINFKYDLGLHPFKLDSSKWECAICQEKLPSLTKLARHTTLHYMNCTCELCGRSYMTKEALKYHKKCAHTETNVCRKCWSTFSSTNEKREHLKVSKKCWPFCCNICKERFMSYEKKSMHQKNVHRLKENTHSCPECSKQFESRRTTLEIRGRSECDTDTKQKIVLVYKTPQRRNAEIVLRYSSAYPFKTRFTQILCAYCHDEFNPLADLRYHVKTEHVTSDFKNVFYRTNDNLIKVDITDLKCKICDVEIQDIDTLMNHLYEEHRKPVKFDARFGVLPYKQNGDDWLCVYCQKVFADFVNFNRHISSHFMHFSCEKCGTTFVSDHQLRDHHRQVKCFRTAYKPRNGRALIPRSNAEVILQCSTACPFRTWKTNFNCVFCRVQSYDPVSLRTHVATRHPNFDVQDAFYKKLGKEFLKIDITDLQCKLCFMPINNLEALTYHLKNDHQQPISDAQLGVVPFNLNDGSIWKCTMCPNEFKDYVSLSKHTFEHFQNYVCDTCGEGFITESAMIAHTKVPHENKYNCSRCIATFSSLDERNIHVKTQHTSMPYMCVYCNDKPRFSNWELRKKHLLEVHNYKTGPRKDIDELVEKESKPKKRLFERSVNQNPHRKNAVLILRHSTAFPFKTRFNRIICSYCHDEFKPMAALRSHIKSDHSNADFNSAFYKVVDELKIDITELKCNICNQEIPSVDTLMTHLSKDHSKSVNFDVPFGVFPYRQGSNGYWMCLECDKTFPDFRQINSHVRRHVKSFTCDKCGATFLSEHGLKQHERNFKCYKATYKPRYGKALKHRSNVEIILQCSTASPFRTWGQNFNCVFCRVQSNDPVGLRTHMASRHADFDIQMVFSRKLRKEFLKVDITDLQCKLCFIRIENLDDLLAHLKNDHKQPINADVQPGVLPFKLNDGSVWKCAICSHQFSDFISLKKHTAEHFQNYVCDTCGEGFITETALIAHTKIPHDNKYTCSRCVATFTTLEERKLHLKTQHTTLPYMCVYCKEKPRFGTWELRRRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKVHRTKTETEYNFPCASCSRAFATKLSLDKHVAKKHFHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00028037;
90% Identity: iTF_01388779; iTF_01386075;
80% Identity: -