Stip015880.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392436.1:3343463-3347324[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.44 26 5.8 0.3 3 23 72 93 71 93 0.97 2 22 0.76 45 5.1 0.1 2 23 118 140 117 140 0.90 3 22 9.1e-05 0.0053 17.4 0.7 3 23 164 184 163 184 0.98 4 22 0.00076 0.044 14.5 2.1 1 21 188 208 188 209 0.96 5 22 1.3 76 4.3 0.3 1 23 250 273 250 273 0.94 6 22 0.12 7 7.6 0.2 2 23 299 321 298 321 0.95 7 22 0.015 0.86 10.4 0.7 2 23 344 365 343 365 0.94 8 22 0.0003 0.017 15.8 0.0 1 23 369 392 369 392 0.97 9 22 0.49 29 5.7 0.5 1 23 396 419 396 419 0.97 10 22 2.9 1.7e+02 3.2 0.3 1 23 424 449 424 449 0.88 11 22 0.056 3.3 8.6 0.3 3 23 508 529 506 529 0.95 12 22 0.013 0.75 10.6 0.2 2 23 553 575 552 575 0.95 13 22 0.00082 0.048 14.4 0.4 2 23 599 620 598 620 0.96 14 22 0.032 1.8 9.4 0.5 1 21 624 644 624 645 0.94 15 22 0.54 32 5.5 0.2 1 23 686 709 686 709 0.95 16 22 0.23 13 6.7 0.1 2 23 735 757 734 757 0.95 17 22 0.014 0.84 10.5 1.2 2 23 781 802 780 802 0.94 18 22 0.00018 0.01 16.5 0.0 1 23 806 829 806 829 0.97 19 22 0.016 0.92 10.4 1.2 1 23 833 856 833 856 0.98 20 22 9.6 5.6e+02 1.6 0.5 1 23 861 886 861 886 0.83 21 22 0.11 6.6 7.7 5.9 1 22 895 916 895 918 0.88 22 22 0.027 1.6 9.6 0.3 1 23 928 951 928 951 0.95
Sequence Information
- Coding Sequence
- ATGTCCCCGCGAACCTGCCTAACAACGGCCGCGCTTGAAAGTCGTTGGGTTTTAGCCGGGACCACATTGGAAATACGCGGACGTAGCGAACGCGACACAGATACAAAACAGAAAATAGTACTTGTATACAAAACACCGCAGCGCCGCAACGCGGAAATTGTATTGAGATTTTCGTCCGCTTATCCGTTTAAGACGAGATTTACCCAAATTCTCTGCGCGTACTGTCACGACGAATTCAATCCGTTAGCGGACCTTAGGTATCACGTGAAAACTGAACACGTCACATCGGATTTTAAAAATGTTTTCTACCGTACAAACGATAATCTCATAAAAGTAGACATAACCGATCTAAAATGTAAAATATGCGATCTAGAAATACAAGACATTGACACGTTAATGAATCATTTGTACGAAGAGCACGGTAAGCCGGTGAAGTTCGACGCGCGTTTCGGTGTGTTGCCTTACAAACAGAACGGTGACGATTGGTTGTGCGTTTACTGTCAAAAGGTCTTCACGGACTTTGTAAATTTCAACAGACACATATCTAGTCACTTTATGCATTTCAGTTGCGAGAAATGCGGTACTACATTCGTTTCCGATCACCAATTGCGCGATCACCATCGCCAAGTCAAATGTTTTAGGACCGCTTACAAGCCGCGCAACGGTCGCGCGTTAATACCCAGAAGTAATGCCGAAGTAATTCTTCAATGTTCAACAGCATGTCCGTTTAGAACATGGAAAACTAACTTCAATTGTGTTTTCTGTCGAGTGCAATCGTATGATCCGGTTAGTTTGCGGACTCACGTGGCTACAAGACACCCAAATTTCGATGTGCAAGACGCGTTCTATAAGAAGTTAGGCAAGGAGTTTCTTAAAATTGACATAACTGATCTTCAATGTAAACTTTGCTTCATGCCCATAAGCAATCTCGAAGATCTCACGTATCATTTGAAAAATGACCACCAACAGCCAATTTCTGATGCACAACTGGGAGTTGTGCCGTTCAATTTGAACGACGGTTCGATATGGAAATGTACAATGTGTCCGAACGAATTTAAAGATTACGTCTCACTCAGCAAGCATACGTTTGAACACTTTCAGAACTATGTTTGTGACACTTGCGGTGAGGGTTTCATTACGGAATCGGCGATGATAGCTCACACGAAAGTGCCACACGAGAACAAGTACAATTGCAGTCGTTGCATCGCGACCTTCTCATCGCTCGACGAAAGAAATGTCCACGTTAAAACACAGCACACATCGATGCCTTACATATGTGTGTACTGTAAAGATAAACCTCGATTTTCTAATTGGGAATTGAGGAAAAAACATCTATTGGAGGTTCACAATTATAAAACTGGACCGAGAAAGGATATAGACGAACTCGTAGAGAAAGAGACTAAACCAAAAAAGAGACTATTCGAAAGATCCGTCAACCAGAATCCACATCGGAAAAACGCTGTACTAATTCTTAGACATTCGACAGCTTTCCCCTTTAAAACACGCTTCAACCGAATAATATGTTCGTATTGTCACGACGAATTTAAACCGATGGCCGCACTGAGAAGCCACATCAAGAGTGATCACTCTAATGCTGATTTCAACAGCGCCTTTTACAAGGTCGTAGACGAATTGAAAATCGACATAACAGAGCTCAAATGCAACATTTGTAACAAAGAAATACCGAGTGTTGATACTCTTATGACACATTTGTCGAAGGACCACAGTAAATCTGTCAACTTTGATGTCCCGTTTGGGGTATTCCCCTACAGGCAAGGATCGAATGGTTACTGGATGTGCTTAGAATGCGACAAGACGTTTCCTGATTTCCGTCAGATTAATAGCCACGTGCGTCGACACGTGAAGAGTTTCACTTGCGACAAGTGCGGTGCTACGTTTCTCTCTGAACACGGCTTGAAACAGCACGAGCGTAACTTTAAATGTTACAAAGCAACTTACAAGCCCAGATACGGGAAAGCTCTCAAGCATAGAAGCAATGTGGAAATCATTCTACAATGTTCAACGGCATCTCCTTTCCGAACTTGGGGCCAGAATTTCAATTGCGTATTTTGTCGGGTACAATCAAACGATCCGGTCGGCTTGCGTACTCACATGGCTTCGCGACATGCCGATTTCGATATTCAAATGGTTTTCAGTAGGAAATTGAGGAAGGAATTTCTGAAAGTGGACATAACAGATCTCCAATGTAAACTGTGTTTTATACGGATTGAAAATTTGGATGAACTGTTGGCTCATCTGAAGAACGATCATAAGCAACCGATCAACGCTGACGTTCAGCCAGGCGTGTTGCCGTTCAAACTGAACGACGGGTCGGTCTGGAAATGCGCGATCTGCTCCCACCAGTTCTCCGATTTCATATCGCTGAAGAAACACACGGCGGAACACTTTCAGAATTACGTTTGCGACACGTGCGGGGAGGGTTTCATAACTGAGACAGCGTTGATCGCTCACACGAAGATACCGCACGACAACAAGTACACGTGCAGCAGATGTGTGGCAACTTTCACAACACTAGAAGAGAGGAAGTTGCATTTGAAAACACAACACACAACACTGCCATACATGTGCGTGTACTGTAAAGAGAAACCTAGGTTCGGGACTTGGGAGTTGAGGCGGCGACACCTGATGGAGTTTCACAATTACAAGCCGGGCGCCGAAATGTACGAGTGTACCACTTGTCATATGACCTTTAAAACAAGATCTCAAAAGTATCATCACAATGTTAAAGTGCACAGAACAAAGACAGAGACTGAATACAATTTCCCATGCGCCAGTTGCTCCAGAGCGTTCGCTACTAAGTTGTCTTTAGACAAACATGTGGCGAAGAAGCATTTTCACGTTTAA
- Protein Sequence
- MSPRTCLTTAALESRWVLAGTTLEIRGRSERDTDTKQKIVLVYKTPQRRNAEIVLRFSSAYPFKTRFTQILCAYCHDEFNPLADLRYHVKTEHVTSDFKNVFYRTNDNLIKVDITDLKCKICDLEIQDIDTLMNHLYEEHGKPVKFDARFGVLPYKQNGDDWLCVYCQKVFTDFVNFNRHISSHFMHFSCEKCGTTFVSDHQLRDHHRQVKCFRTAYKPRNGRALIPRSNAEVILQCSTACPFRTWKTNFNCVFCRVQSYDPVSLRTHVATRHPNFDVQDAFYKKLGKEFLKIDITDLQCKLCFMPISNLEDLTYHLKNDHQQPISDAQLGVVPFNLNDGSIWKCTMCPNEFKDYVSLSKHTFEHFQNYVCDTCGEGFITESAMIAHTKVPHENKYNCSRCIATFSSLDERNVHVKTQHTSMPYICVYCKDKPRFSNWELRKKHLLEVHNYKTGPRKDIDELVEKETKPKKRLFERSVNQNPHRKNAVLILRHSTAFPFKTRFNRIICSYCHDEFKPMAALRSHIKSDHSNADFNSAFYKVVDELKIDITELKCNICNKEIPSVDTLMTHLSKDHSKSVNFDVPFGVFPYRQGSNGYWMCLECDKTFPDFRQINSHVRRHVKSFTCDKCGATFLSEHGLKQHERNFKCYKATYKPRYGKALKHRSNVEIILQCSTASPFRTWGQNFNCVFCRVQSNDPVGLRTHMASRHADFDIQMVFSRKLRKEFLKVDITDLQCKLCFIRIENLDELLAHLKNDHKQPINADVQPGVLPFKLNDGSVWKCAICSHQFSDFISLKKHTAEHFQNYVCDTCGEGFITETALIAHTKIPHDNKYTCSRCVATFTTLEERKLHLKTQHTTLPYMCVYCKEKPRFGTWELRRRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKVHRTKTETEYNFPCASCSRAFATKLSLDKHVAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028037;
- 90% Identity
- iTF_01387837;
- 80% Identity
- -