Sand015337.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020001038.1:37476-41357[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.44 28 5.8 0.3 3 23 67 88 66 88 0.97 2 22 0.99 62 4.7 0.1 2 23 113 135 112 135 0.90 3 22 9.2e-05 0.0057 17.4 0.7 3 23 159 179 158 179 0.98 4 22 0.00077 0.048 14.5 2.1 1 21 183 203 183 204 0.96 5 22 1.3 82 4.3 0.3 1 23 245 268 245 268 0.94 6 22 0.47 29 5.8 0.2 2 23 294 316 293 316 0.95 7 22 0.0057 0.35 11.8 0.6 2 23 339 360 338 360 0.95 8 22 0.0003 0.019 15.8 0.0 1 23 364 387 364 387 0.97 9 22 0.5 31 5.7 0.5 1 23 391 414 391 414 0.97 10 22 2.6 1.6e+02 3.4 0.5 1 23 419 444 419 444 0.89 11 22 0.057 3.5 8.6 0.3 3 23 503 524 501 524 0.95 12 22 0.045 2.8 9.0 0.2 2 23 548 570 547 570 0.95 13 22 0.00083 0.051 14.4 0.4 2 23 594 615 593 615 0.96 14 22 0.032 2 9.4 0.5 1 21 619 639 619 640 0.94 15 22 0.55 34 5.5 0.2 1 23 681 704 681 704 0.95 16 22 0.2 13 6.9 0.1 2 23 730 752 729 752 0.95 17 22 0.015 0.91 10.5 1.2 2 23 776 797 775 797 0.94 18 22 0.00018 0.011 16.5 0.0 1 23 801 824 801 824 0.97 19 22 0.016 1 10.4 1.2 1 23 828 851 828 851 0.98 20 22 9.7 6e+02 1.6 0.5 1 23 856 881 856 881 0.83 21 22 0.11 7.1 7.7 5.9 1 22 890 911 890 913 0.88 22 22 0.027 1.7 9.6 0.3 1 23 923 946 923 946 0.95
Sequence Information
- Coding Sequence
- ATGCGAATAAAACTCACAGTCGTCGTTTGCGTTAATCAATCAAGGACCACATTGGAAATACGCGGACGTAGCGAATGCGACACAGATACAAAACAGAAAATAGTACTTGTATACAAAACCCCGCAGCGCCGCAACGCGGAAATAGTATTGAGATATTCGTCCGCTTATCCCTTTAAGACCAGATTTACCCAAATTCTCTGCGCGTATTGTCACGACGAATTCAATCCCTTAGCCGATCTTAGGTATCATGTGAAAACTGAACACGTCACATCCGATTTTAAAAATGTTTTCTACCGTACAAACGATAATCTCATCAAAGTAGACATAACTGATTTAAAATGTAAAATATGCGATGTAGAAATACAAGACATTGACACATTAATGAATCATTTGTACCAAGAGCATGGAAAGCCGGTGAAATTCGACGCGCGTTTCGGTGTGTTGCCCTACAAACAGAACGGAGACGATTGGTTATGCGTTTACTGTCAAAAGGTCTTCACGGACTTTGTAAATTTTAACAGACACATATCTAGTCACTTTATGCATTTCAGTTGCGAAAAATGCGGTACAACATTCGTTTCTGATCATCAATTGCGCGATCACCATCGCCAAGTCAAATGTTTCAGGACTGCTTACAAACCGCGCAACGGGCGCGCGTTGATACCCAGAAGTAATGCCGAAGTAATTCTTCAATGTTCAACAGCATGTCCGTTTAGAACTTGGAAATCCAACTTCAATTGTGTTTTCTGTCGAGTGCAATCCTATGATCCAGTTAGTTTGCGGACTCACGTGGCTACAAGACACCCAAATTTCGATGTGCAAGATGCGTTTTATAAGAAGTTAGGCAAAGAGTTTCTTAAAATTGATATAACTGATCTTCAATGTAAACTTTGCTTCATGCCTATAAACAATCTCGAAGCTCTCACATATCATTTGAAAAATGACCACCAACAGCCAATTTCTGATGCACAACTAGGAGTTGTACCGTTCAATTTGAACGACGGGTCGATATGGAAATGCACAATGTGTCCGAACGAATTTAAAGATTTCGTGTCCCTCAACAAGCATACGTCTGAACACTTTCAGAACTATGTTTGTGACACTTGTGGTGAGGGTTTTATTACGGAATCGGCGATGATAGCTCATACGAAAGTGCCACACGAGAACAAATACAATTGCAGTCGGTGCATAGCGACTTTCTCATCGCTCGACGAAAGAAATGTCCACGTTAAAACACAGCACACATCGATGCCATACATGTGTGTGTACTGTAAAGATAAACCCCGTTTTTCTAACTGGGAATTGAGGAAAAAACATCTATTGGAGGTTCACAATTATAAGACTGGACCGAGAAAGGATATAGACGAACTCGTAGAGAAAGAGAGTAAACCAAAAAAGAGACTATTCGAAAGATCCGTCAACCAGAATCCACATCGGAAAAACGCAGTATTAATTCTTAGACATTCGACAGCTTTCCCTTTTAAAACACGCTTCAACCGAATAATATGTTCGTATTGTCACGATGAATTTAAACCGATGGCGGCATTGAGAAGCCACATCAAGAGTGACCACTCTAATGCTGATTTCAACAGCGCCTTTTACAAGGTCGTAGATGAATTGAAAATCGACATAACAGAACTCAAATGCAACATTTGTAACAAAGAAATGCCAAGTGTGGATACTCTTATGACACATTTGTCGAAGGATCACAGTAAATCTGTCAACTTTGAAGTCCCGTTTGGCGTATTCCCTTATAGACAAGGTTCGAATGGTTACTGGATGTGCTTAGAGTGCGACAAGACATTTCCTGATTTCCGTCAGATCAATAGCCACGTGCGTCGACACGTGAAGAGTTTCACTTGCGACAAGTGCGGTGCTACATTTCTATCTGAACACGGTTTGAAACAACATGAACGTAACTTTAAATGTTATAAAGCAACGTACAAGCCCAGATATGGGAAAGCTCTCAAGCATAGAAGCAATGTGGAAATCATTCTCCAATGTTCAACTGCGTCTCCTTTCCGAACTTGGGGCCAGAATTTCAATTGCGTATTTTGTCGGGTACAATCAAACGATCCGGTCGGCTTGCGTACTCACATGGCTTCGCGCCATGCCGATTTCGATATTCAAATGGTTTTCAGTAGGAAATTAAGGAAGGAAttcctgaaagtggacataactgatctccaatgtaaactgtgttttatacggattgaaaatttggatgatttgttggctcatctgaagaacgatcataagcaaccgatcaacgctgatgttcagccaggcgtgttgccgtttaaactgaacgacgggtcggtgtggaaatgtgcgatctgctcccaccagttctccgattttatatcgctgaagaaacacacggcggaacactttcagaattacgtttgcgacacatgcggggagggattcataactgagacagcgttgatcgctcacacgaagataccacacgacaacaaatacacgtgcagcagatgtgtagcaaCATTCACGACACTAGAAGAGAGGAAGTTACATTTGAAAACTCAACACACAACTCTACCTTATATGTGCGTGTACTGTAAGGAGAAACCGAGGTTCGGCACTTGGGAGTTAAGGAGGAGACATTTGATGGAGTTTCACAATTACAAGCCGGGCGCTGAAATGTACGAGTGTACCACTTGTCATATGACATTTAAAACTAGATCTCAAAAGTATCATCACAATGTTAAAGTGCATAGAACAAAGACAGAGACTGAATACAATTTCCCTTGTGCCAGTTGCTCCAGAGCGTTCGCTACTAAGTTGTCTTTAGACAAACATGTGGCAAAGAAGCATTTTCATGTTTAA
- Protein Sequence
- MRIKLTVVVCVNQSRTTLEIRGRSECDTDTKQKIVLVYKTPQRRNAEIVLRYSSAYPFKTRFTQILCAYCHDEFNPLADLRYHVKTEHVTSDFKNVFYRTNDNLIKVDITDLKCKICDVEIQDIDTLMNHLYQEHGKPVKFDARFGVLPYKQNGDDWLCVYCQKVFTDFVNFNRHISSHFMHFSCEKCGTTFVSDHQLRDHHRQVKCFRTAYKPRNGRALIPRSNAEVILQCSTACPFRTWKSNFNCVFCRVQSYDPVSLRTHVATRHPNFDVQDAFYKKLGKEFLKIDITDLQCKLCFMPINNLEALTYHLKNDHQQPISDAQLGVVPFNLNDGSIWKCTMCPNEFKDFVSLNKHTSEHFQNYVCDTCGEGFITESAMIAHTKVPHENKYNCSRCIATFSSLDERNVHVKTQHTSMPYMCVYCKDKPRFSNWELRKKHLLEVHNYKTGPRKDIDELVEKESKPKKRLFERSVNQNPHRKNAVLILRHSTAFPFKTRFNRIICSYCHDEFKPMAALRSHIKSDHSNADFNSAFYKVVDELKIDITELKCNICNKEMPSVDTLMTHLSKDHSKSVNFEVPFGVFPYRQGSNGYWMCLECDKTFPDFRQINSHVRRHVKSFTCDKCGATFLSEHGLKQHERNFKCYKATYKPRYGKALKHRSNVEIILQCSTASPFRTWGQNFNCVFCRVQSNDPVGLRTHMASRHADFDIQMVFSRKLRKEFLKVDITDLQCKLCFIRIENLDDLLAHLKNDHKQPINADVQPGVLPFKLNDGSVWKCAICSHQFSDFISLKKHTAEHFQNYVCDTCGEGFITETALIAHTKIPHDNKYTCSRCVATFTTLEERKLHLKTQHTTLPYMCVYCKEKPRFGTWELRRRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKVHRTKTETEYNFPCASCSRAFATKLSLDKHVAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028037;
- 90% Identity
- iTF_01387837;
- 80% Identity
- -