Smyo016279.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010001156.1:125897-131089[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-12 8.8e-09 35.1 0.0 4 39 143 179 140 183 0.89 2 4 6e-11 1.2e-07 31.5 0.1 7 39 200 232 197 235 0.91 3 4 4.5e-12 9.4e-09 35.0 0.2 2 43 250 291 249 293 0.93 4 4 4.3e-15 8.8e-12 44.7 0.3 3 44 302 344 300 345 0.93
Sequence Information
- Coding Sequence
- ATGCCTGGACAGAGACATCTCCAAGTAAAATGTGAACCACCTTCAGAAGATGAAGACAGCGACTCACAATTCTCTCTTGGTTACTTAACAAACACGGGTTCTGACACTTTGGAAGAGCTGGCTCCATTGGCGCCCGCAGCCCCCAGTGCGACCCCTGTGTGTGTTAAGCAGGAACCTGCTGAAACTCCGCCTAGTAACATATTGGAGACTCTTGAACCAGCATCACACAACGCGTCTATCAAACTCATTGACAGGCACATGACAATATTGAACGGACACAGTACACCCGACTTCTCGGAATTTGTGCCGTTACTCTCCGTAAAGAATGAATCCTCGTTAGAAGGAGAGACAGAGGCGGAGGGTGAAGAGACGCAATACCCTGGGACACGCAAGTGCAGCGGCAGCCCCAAGGGATGGACGCAGAGGGACATGGAGTGCGCCCTCGAAGCGCTCAGGGAGCAGAAGATGAGCCTCACGAAGGCGTCCGCCGCGTACGGCATCCCGTCCACGACTCTATGGCAGCGCGCGCACAGACTGGGCATCGACACGCCGAAGAAGGAGGGCGGCGCTAAGTCGTGGTCGGCGCGTGATCTGGGCGACGCGCTGCAAGCGCTGCGAGCGGGCGCACTGTCGGCGAACAAGGCGAGTAAGGCGTTCGGCATTCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGACTGGCGGCGCCGTTCAACGCGGCGCCGACCGCGTGGCGTCGCGCGGATCTCGCGCGCGCGTTGGCCGCCATCCGCGCGGGCGCCGGCGTGCAAGCGGCGGCCGCGCGCTTCGGCATCCCCTCGGGCACGCTCTACGGCCGCTGCAAGCGCGAGGGCATCGGCCTGGCGCGCGCTCAGCCCGCGCCCTGGTCCGAGCGCGCCATGCACGCCGCGCTTGCCGCCGTCGCCAACTCGAGCATGTCCATCAACCAGGCCGCCATCCACTTCAACCTGCCCTACTCCTCCCTCTACGGCCGCTTCAAGAGGTGCAAGTACCAGATGCAACAACCGCTGCAGCAACAGCTGGACACGACACTCGCGGAGCCCGAGGGTGCGCCAATGGAGCCCTACGCCCATCTCTACTGGCCGACAACCAACGAGCTCACCACTTGA
- Protein Sequence
- MPGQRHLQVKCEPPSEDEDSDSQFSLGYLTNTGSDTLEELAPLAPAAPSATPVCVKQEPAETPPSNILETLEPASHNASIKLIDRHMTILNGHSTPDFSEFVPLLSVKNESSLEGETEAEGEETQYPGTRKCSGSPKGWTQRDMECALEALREQKMSLTKASAAYGIPSTTLWQRAHRLGIDTPKKEGGAKSWSARDLGDALQALRAGALSANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRAGAGVQAAAARFGIPSGTLYGRCKREGIGLARAQPAPWSERAMHAALAAVANSSMSINQAAIHFNLPYSSLYGRFKRCKYQMQQPLQQQLDTTLAEPEGAPMEPYAHLYWPTTNELTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388386; iTF_01385622;
- 90% Identity
- -
- 80% Identity
- -