Stip016020.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392419.1:404469-409495[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 1.1e-08 34.9 0.0 4 39 146 182 143 186 0.89 2 4 1.3e-11 1.1e-08 34.9 0.1 4 39 200 235 200 238 0.93 3 4 1.2e-11 1e-08 35.0 0.2 2 43 253 294 252 296 0.93 4 4 7e-16 6.1e-13 48.5 0.3 3 44 305 347 303 348 0.93
Sequence Information
- Coding Sequence
- ATGCCTGGCCAGAGACATCTCCAAGTAAAATGTGAACCACCTTCAGAAGATGAAGATAGCGATTCACAATTCTCTCTTGGTTACTTAACAAATACGGGTACTGACACGTTGGAAGAGCTGGCTCCATTGGCGCCAGCAGCCCCCAGTGCGACCCCGGTGTGTGTTAAGCAGGAACCCGCTGAAACTCCGCCTAGCAACATATTGGAGACTCTTGAACCAGCATCACACAATGCGTCTACCAAACTCATTGACAGGCACATGACAATATTGAACGGCCACAGTCCACCCGACTTTTTAGAATTTGTGCCGTTACTCTCCGTAAAAAATGAACCCTCGTTAGAAGGAGAACATGGGTGCAGCGTGGAGACTGAGGCAGAGGGTGAGTCCCCTGGGACTCGCAAGGGCAGCAGCAGCCCCAAGGGATGGACGCAGAGGGACATGGAGTCCGCCCTGGACGCCCTCAGGGAGCAGAAGATGAGCCTCACGAAGGCGTCCGCCGCGTACGGCATCCCCTCCACCACTCTGTGGCAGCGCGCCCACAGACTGGGCATCGACACGCCAAAGAAGGAGGGCGGCGCGAAGTCGTGGTCGGCGCTCGACCTGCGCGAGGCGCTGCAGGCGCTGCGGGCGGGCGCCCTGTCGGCGAACAAAGCGAGCAAGGCGTTCGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCCTTCAACGCGGCGCCGACCGCGTGGCGCCGCGCGGACCTGGCGCGCGCGCTCGCGGCAATCCGCGCGGGCGCCGGCGTGCAGGCGGCGGCCGCTCGCTTCGGCATCCCCTCGGGCACGCTGTACGGCCGCTGCAAGCGCGAGGGCATAGGGCTGGCGCGAGCGCAGGCCGCGCCCTGGTCCGAGCGCGCCATGGAGGCGGCGCTGGCCGCCGTCGCCGCGGGCAGCATGTCCATCAACCAGGCCGCCATCCACTTCAACCTGCCCTACTCCTCGCTCTACGGCCGCTTCAAGAGGTGCAAGTACCAGATGCAACAACCACTGCAGCAACAGCTAGTGCCGGAGTACGAATACTGCGACACGACAATAGCGGAGCCCGAGGTTCCGCCGGCGGAGCCCTACGCCCACCTCTACTGGCCGTCAGCCAACGAACTCATCACTTGA
- Protein Sequence
- MPGQRHLQVKCEPPSEDEDSDSQFSLGYLTNTGTDTLEELAPLAPAAPSATPVCVKQEPAETPPSNILETLEPASHNASTKLIDRHMTILNGHSPPDFLEFVPLLSVKNEPSLEGEHGCSVETEAEGESPGTRKGSSSPKGWTQRDMESALDALREQKMSLTKASAAYGIPSTTLWQRAHRLGIDTPKKEGGAKSWSALDLREALQALRAGALSANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRAGAGVQAAAARFGIPSGTLYGRCKREGIGLARAQAAPWSERAMEAALAAVAAGSMSINQAAIHFNLPYSSLYGRFKRCKYQMQQPLQQQLVPEYEYCDTTIAEPEVPPAEPYAHLYWPSANELIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387533;
- 90% Identity
- -
- 80% Identity
- -