Sand013378.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000850.1:175804-181643[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-11 4.9e-09 36.1 0.0 4 39 174 210 171 214 0.89 2 4 3.8e-10 9.5e-08 32.0 0.1 5 39 229 263 227 266 0.92 3 4 4.8e-11 1.2e-08 34.9 0.2 2 43 281 322 280 324 0.93 4 4 4.1e-15 1e-12 47.9 0.2 3 44 333 375 331 376 0.93
Sequence Information
- Coding Sequence
- ATGCCTGGCCAGAGACATCTCCAAGTAAAATGTGAACCACCTTCAGAAGATGAAGACAGCGACTCACAATTCTCTCTTGGTTACTTAACAAACACGCTTACATTTTCATGTGTGAAATTAGAAGCTGAGCCTGCCGAGGAAAATGTGGGCATACATCTTCTGCATTTACAGGGCTCTGACCCGTTGGAAGAGCTGGCTCCATTGGCGCCAGCAGCCCCCAGTGCGACCCCGGTGTGTGTTAAGCAGGAACCTGCTGAAACTCCGCCTAGTAACATATTGGAGACTCTTGAACCAGCATCACACAACGCGTCTACCAAACTCATTGATAGGCACATGACAATATTGAATGGCCACAGTACACCTGACTTCTCGGAATTTGTGCCATTACTCTCCGTAAAGAATGAACCCTCAATAGAAGGAGAACATGGACGCAGCGTGGAGACAGAGGCGGAGGGTGAAGAGACGCAATCCCCTGGGACTCGCAAGGGCAGCAGCAGCCCCAAAGGATGGACGCAAAGGGACATGGAGTCCGCCCTCGAAGCGCTCAGGGAGCAGAAGATGAGCCTCACGAAGGCCTCCGCCGCGTACGGCATCCCCTCCACCACCCTGTGGCAGCGCGCCCACAGGCTGGGCATCGACACGCCAAAGAAGGAGGGCGGCACGAAGTCGTGGTCGGCGCGCGATCTGCGCGACGCGCTGCAGGCGCTGCGGGCGGGCGCGCTGTCGGCGAACAAGGCGAGCAAGGCGTTCGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCCTTCAACGCGGCGCCGACCGCGTGGCGCCGCGCGGACCTGGCGCGCGCGCTGGCCGCCATCCGCGCGGGCGCCGGCGTGCAGGCCGCGGCCGCGCGCTTCGGCATCCCCTCGGGCACGCTCTACGGCCGCTGCAAGCGCGAGGGCATCGGCCTGGCGCGCGCGCAGCCCGCGCCCTGGTCCGAGCGCGCCATGGAGGCCGCGCTGGCCGCCGTCGCTGGGGGCCGCATGTCCATCAACCAGGCCGCCATCCACTTCAACCTGCCCTACTCCTCCCTCTACGGCCGCTTCAAGAGGTGCAAGTACCAGATTCAACAGCCGCTGCAGCAACAGCTGGTGCCGGAGTACGAATACTGCGACACAACAATAGCGGAGCCCGAGGGTCCGCCGGTGGAGCCCTACGCACACCTCTACTGGCCGACACCCAACGAACTCACCACTTGA
- Protein Sequence
- MPGQRHLQVKCEPPSEDEDSDSQFSLGYLTNTLTFSCVKLEAEPAEENVGIHLLHLQGSDPLEELAPLAPAAPSATPVCVKQEPAETPPSNILETLEPASHNASTKLIDRHMTILNGHSTPDFSEFVPLLSVKNEPSIEGEHGRSVETEAEGEETQSPGTRKGSSSPKGWTQRDMESALEALREQKMSLTKASAAYGIPSTTLWQRAHRLGIDTPKKEGGTKSWSARDLRDALQALRAGALSANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRAGAGVQAAAARFGIPSGTLYGRCKREGIGLARAQPAPWSERAMEAALAAVAGGRMSINQAAIHFNLPYSSLYGRFKRCKYQIQQPLQQQLVPEYEYCDTTIAEPEGPPVEPYAHLYWPTPNELTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387533;
- 90% Identity
- -
- 80% Identity
- -