Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000238.1:10754-16220[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.9 2.7e+03 -1.2 0.0 26 45 303 322 298 328 0.87

2 12 0.002 6 7.3 0.2 20 48 492 520 487 522 0.84

3 12 5.4 1.6e+04 -3.7 0.0 27 48 531 552 529 554 0.81

4 12 0.069 2.1e+02 2.4 0.0 27 49 559 581 556 584 0.92

5 12 0.023 68 3.9 0.4 27 48 587 608 583 611 0.88

6 12 1.8 5.4e+03 -2.2 0.0 26 48 617 639 615 641 0.86

7 12 2.8 8.5e+03 -2.8 0.0 27 48 646 667 645 669 0.88

8 12 0.02 60 4.1 0.1 27 49 674 696 671 699 0.92

9 12 0.0065 20 5.7 0.0 27 48 702 723 698 727 0.92

10 12 0.0028 8.4 6.8 0.1 24 49 727 752 720 755 0.87

11 12 0.0067 20 5.6 0.1 6 46 765 805 761 811 0.84

12 12 0.031 93 3.5 0.1 4 48 818 862 812 867 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.9	2.7e+03	-1.2	0.0	26	45	303	322	298	328	0.87
2	12	0.002	6	7.3	0.2	20	48	492	520	487	522	0.84
3	12	5.4	1.6e+04	-3.7	0.0	27	48	531	552	529	554	0.81
4	12	0.069	2.1e+02	2.4	0.0	27	49	559	581	556	584	0.92
5	12	0.023	68	3.9	0.4	27	48	587	608	583	611	0.88
6	12	1.8	5.4e+03	-2.2	0.0	26	48	617	639	615	641	0.86
7	12	2.8	8.5e+03	-2.8	0.0	27	48	646	667	645	669	0.88
8	12	0.02	60	4.1	0.1	27	49	674	696	671	699	0.92
9	12	0.0065	20	5.7	0.0	27	48	702	723	698	727	0.92
10	12	0.0028	8.4	6.8	0.1	24	49	727	752	720	755	0.87
11	12	0.0067	20	5.6	0.1	6	46	765	805	761	811	0.84
12	12	0.031	93	3.5	0.1	4	48	818	862	812	867	0.80

Sequence Information

Coding Sequence: ATGGCTGAAACATTGAACCCAATACCTTTTTGTAGATGTTGTCACAAGAATGGTGACTTCAAGTGTTTATTTACCGACTTCATTTACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACTTTTGGAATCTTAACGACACAGTTCCGGTCACAGATGTATGTGGATTGTGAGACTAAAAGTTCCAAGACCGGAGCAATTTCCTTCCACTTAGATCTTTCTCGTTATCAGCCCACTGCCACTCATAAGTTTGTACCCTCCATAGATGACCAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACAGAATTCAAGAATTGTGTTCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCCGTGCTCGGTTTGGCGGGCGCACTTCAGTGACCCCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAGTGACACAGGTATAATAAATGAGGTTTCAGACGAAGAGTGTGATCAAAAGGTCAAAGTTGAAGAGAGCGGAAACAAATCGGATGAAACTTGGAGTGAATCTGAAGAAGCGTTAATAGCAGACGACATCAAAGTTGAAACAGAAGAGATGGTCAACAATGAAGACTCAGGAATAAATAAGGTTTTAGATGAAGAGTCCAATGAAGATGTCAGAAAAGAAGACTCAATTATAAATAAGGTTTTAGATGAAGCGTTCAATGAAGATGTCAGAAATGAAGACTCAATTATAAATAAGGTTTTAGATGAAGCGTTCAATGAAGATGTCAGAAATGAAGACTCAATTATGAATAAGGTTTTAGATGAAGAGTCGAATGAAGAGATTGAAATGAAATCAGATGAAACTTTAAGTGATGCTGGTGTCACTTTAAGAAAAGCAAGCGACATACATGAGTATAAATGTGACATTTGCAATAAAACATTTAAACGCAAAGGGAATCTAGAAAATCACGTCAGAACTCACAAAGGCTCTAAACGCCAAACATGTCCAGAGATATTGTCGAATAAGAGAGAGAACGCGAAACATCATCAGTTGAAAGTTCACATGGACAGACAGACACATGAGTGCCAAGAGTGCGGTCGAAAATTCACTCAAAAGGGAAGCTTACTAAGCCATTGTCGAGTGGTGCATATGGATTTAAAAAAGTACAGTTGCCGGTATTGCGATAAAAGAATTGCGACGAAACACAACCTGGCTATACATGAAAGGACACACACGGGTGAAAAACCGTATGTCTGCGAAAAATGTGATAAATCGTTTCAAAGTAAAAAGAGTTTACTGAATCATAATGCAGTGCATTTGGCCCGTaagctttacaattgtaacgtgtgtaataaagcattcatgacgaaaaatcatttaaacagacacatggtgacacatactgggataagttctttcgaatgcagtgtctgtagcaagagttttgcacttaaatattatcttaataaacacatgaagagtcataatgacaaaatttatgagtgcgacgtttgcaagaagacatttaaatgcaaacagaatttaaggaggcacatttcgattgtacataatttgggccttaagtcaatgtccactgagtgtgatatttgcaagaagacatttaaatgtaaatggagtttaagcgagcacatgtcgattatacatttgggctttaagcatcactgcgacatttgcaagaagacatttaaatacaaaaagaatttaagcgagcacatgtcagttgcacatttgggcattaagcttgactgcgacatttgcaaaaagaCATTTAAACACAAGCGATATATACGCCGGCACATGTTGGCTGTACATTTGGGCTTTAGGCGAATGTCCACTGAATGCGACATTTGCAAGAAGACATTTAAATGCAAACAGAGTTTAAGCGAGCATATGTCGGTTGTACATTTGGGCTTTAAGCTTGACTGCGACATTTGCAAGAAGACATTTAAATACAAACAGACTTTAAGCGAGCATATGTCGGTTGTACATTTGGGCTTTAAGTTTGACtgtgacatttgcaagaagacatttcaaaccaaacggtatttaagggagcacatgtcgattgcacatttgggctttaaaatggactgtgacatttgcaaaaagacatttaaatacaaatcgaatttaagggagcacttgtcgattgcacattcggactttaaactggactgtgacatttgcaaaaagacatttaaatacaaacataatttaagggagcacatgtcggctgtacatttcggtttcaagtttgactgcaacatttgcaagaagacatttaaacacaaaagtagtttaaacaggcacatGTCGGCTGCACATTCGGCCCTTAAGCTTGACTGCGACATTTGCATGAAGACATTTAAACACAAATTGAATTTAAGGGAGCACATGGCTGTACATTCGGCCTTAAAGTTTGACTGCGACATTTGCAAGAAGACATTTAAACACAAAAAGAGTTTAAGCAGGCACAGATCGGTTGCACATTCGGTTTTTAAGCTTGACTGCAACATTTGCAAGAAGACATTTAAATACAAAAAGACTTTAAGCAAGCACATGTCGGCTGTACATTTAGACTTTAAGCCAATTCCCACTTAG
Protein Sequence: MAETLNPIPFCRCCHKNGDFKCLFTDFIYENEIENYSQMLYDTFGILTTQFRSQMYVDCETKSSKTGAISFHLDLSRYQPTATHKFVPSIDDQIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARFGGRTSVTPDMKQETSEDEDSDTGIINEVSDEECDQKVKVEESGNKSDETWSESEEALIADDIKVETEEMVNNEDSGINKVLDEESNEDVRKEDSIINKVLDEAFNEDVRNEDSIINKVLDEAFNEDVRNEDSIMNKVLDEESNEEIEMKSDETLSDAGVTLRKASDIHEYKCDICNKTFKRKGNLENHVRTHKGSKRQTCPEILSNKRENAKHHQLKVHMDRQTHECQECGRKFTQKGSLLSHCRVVHMDLKKYSCRYCDKRIATKHNLAIHERTHTGEKPYVCEKCDKSFQSKKSLLNHNAVHLARKLYNCNVCNKAFMTKNHLNRHMVTHTGISSFECSVCSKSFALKYYLNKHMKSHNDKIYECDVCKKTFKCKQNLRRHISIVHNLGLKSMSTECDICKKTFKCKWSLSEHMSIIHLGFKHHCDICKKTFKYKKNLSEHMSVAHLGIKLDCDICKKTFKHKRYIRRHMLAVHLGFRRMSTECDICKKTFKCKQSLSEHMSVVHLGFKLDCDICKKTFKYKQTLSEHMSVVHLGFKFDCDICKKTFQTKRYLREHMSIAHLGFKMDCDICKKTFKYKSNLREHLSIAHSDFKLDCDICKKTFKYKHNLREHMSAVHFGFKFDCNICKKTFKHKSSLNRHMSAAHSALKLDCDICMKTFKHKLNLREHMAVHSALKFDCDICKKTFKHKKSLSRHRSVAHSVFKLDCNICKKTFKYKKTLSKHMSAVHLDFKPIPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386931;
90% Identity: iTF_01386931;
80% Identity: iTF_01386931;