Sfor020164.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000238.1:10754-16220[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.6e-09 4.9e-07 30.1 1.8 1 23 302 324 302 324 0.99 2 19 0.00034 0.019 15.6 3.3 1 23 357 380 357 380 0.93 3 19 8.3e-05 0.0047 17.5 2.0 1 23 386 408 386 408 0.99 4 19 5.3e-05 0.003 18.2 0.9 1 23 414 436 414 436 0.95 5 19 2.6e-06 0.00015 22.3 2.9 1 23 442 464 442 464 0.98 6 19 3.6e-06 0.0002 21.8 2.0 1 23 470 492 470 492 0.98 7 19 0.00011 0.0061 17.2 3.2 1 23 497 520 497 520 0.97 8 19 0.0035 0.2 12.4 1.8 2 23 530 552 529 552 0.95 9 19 4.6e-05 0.0026 18.3 4.8 1 23 557 580 557 580 0.95 10 19 9.2e-05 0.0052 17.4 2.2 3 23 587 608 585 608 0.93 11 19 0.0043 0.24 12.2 2.4 2 23 617 639 616 639 0.95 12 19 4.2e-05 0.0024 18.5 0.6 3 23 646 667 644 667 0.95 13 19 1.4e-05 0.00081 19.9 1.1 1 23 672 695 672 695 0.96 14 19 2.8e-06 0.00016 22.2 0.7 3 23 702 723 700 723 0.95 15 19 8e-06 0.00045 20.7 1.8 3 23 730 751 728 751 0.93 16 19 5e-07 2.8e-05 24.5 3.0 1 23 756 779 756 779 0.94 17 19 0.00032 0.018 15.7 1.3 3 23 786 806 784 806 0.96 18 19 2.2e-05 0.0012 19.4 3.7 1 23 811 834 811 834 0.95 19 19 1.8e-05 0.001 19.6 1.5 3 23 841 862 839 862 0.93
Sequence Information
- Coding Sequence
- ATGGCTGAAACATTGAACCCAATACCTTTTTGTAGATGTTGTCACAAGAATGGTGACTTCAAGTGTTTATTTACCGACTTCATTTACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACTTTTGGAATCTTAACGACACAGTTCCGGTCACAGATGTATGTGGATTGTGAGACTAAAAGTTCCAAGACCGGAGCAATTTCCTTCCACTTAGATCTTTCTCGTTATCAGCCCACTGCCACTCATAAGTTTGTACCCTCCATAGATGACCAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACAGAATTCAAGAATTGTGTTCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCCGTGCTCGGTTTGGCGGGCGCACTTCAGTGACCCCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAGTGACACAGGTATAATAAATGAGGTTTCAGACGAAGAGTGTGATCAAAAGGTCAAAGTTGAAGAGAGCGGAAACAAATCGGATGAAACTTGGAGTGAATCTGAAGAAGCGTTAATAGCAGACGACATCAAAGTTGAAACAGAAGAGATGGTCAACAATGAAGACTCAGGAATAAATAAGGTTTTAGATGAAGAGTCCAATGAAGATGTCAGAAAAGAAGACTCAATTATAAATAAGGTTTTAGATGAAGCGTTCAATGAAGATGTCAGAAATGAAGACTCAATTATAAATAAGGTTTTAGATGAAGCGTTCAATGAAGATGTCAGAAATGAAGACTCAATTATGAATAAGGTTTTAGATGAAGAGTCGAATGAAGAGATTGAAATGAAATCAGATGAAACTTTAAGTGATGCTGGTGTCACTTTAAGAAAAGCAAGCGACATACATGAGTATAAATGTGACATTTGCAATAAAACATTTAAACGCAAAGGGAATCTAGAAAATCACGTCAGAACTCACAAAGGCTCTAAACGCCAAACATGTCCAGAGATATTGTCGAATAAGAGAGAGAACGCGAAACATCATCAGTTGAAAGTTCACATGGACAGACAGACACATGAGTGCCAAGAGTGCGGTCGAAAATTCACTCAAAAGGGAAGCTTACTAAGCCATTGTCGAGTGGTGCATATGGATTTAAAAAAGTACAGTTGCCGGTATTGCGATAAAAGAATTGCGACGAAACACAACCTGGCTATACATGAAAGGACACACACGGGTGAAAAACCGTATGTCTGCGAAAAATGTGATAAATCGTTTCAAAGTAAAAAGAGTTTACTGAATCATAATGCAGTGCATTTGGCCCGTaagctttacaattgtaacgtgtgtaataaagcattcatgacgaaaaatcatttaaacagacacatggtgacacatactgggataagttctttcgaatgcagtgtctgtagcaagagttttgcacttaaatattatcttaataaacacatgaagagtcataatgacaaaatttatgagtgcgacgtttgcaagaagacatttaaatgcaaacagaatttaaggaggcacatttcgattgtacataatttgggccttaagtcaatgtccactgagtgtgatatttgcaagaagacatttaaatgtaaatggagtttaagcgagcacatgtcgattatacatttgggctttaagcatcactgcgacatttgcaagaagacatttaaatacaaaaagaatttaagcgagcacatgtcagttgcacatttgggcattaagcttgactgcgacatttgcaaaaagaCATTTAAACACAAGCGATATATACGCCGGCACATGTTGGCTGTACATTTGGGCTTTAGGCGAATGTCCACTGAATGCGACATTTGCAAGAAGACATTTAAATGCAAACAGAGTTTAAGCGAGCATATGTCGGTTGTACATTTGGGCTTTAAGCTTGACTGCGACATTTGCAAGAAGACATTTAAATACAAACAGACTTTAAGCGAGCATATGTCGGTTGTACATTTGGGCTTTAAGTTTGACtgtgacatttgcaagaagacatttcaaaccaaacggtatttaagggagcacatgtcgattgcacatttgggctttaaaatggactgtgacatttgcaaaaagacatttaaatacaaatcgaatttaagggagcacttgtcgattgcacattcggactttaaactggactgtgacatttgcaaaaagacatttaaatacaaacataatttaagggagcacatgtcggctgtacatttcggtttcaagtttgactgcaacatttgcaagaagacatttaaacacaaaagtagtttaaacaggcacatGTCGGCTGCACATTCGGCCCTTAAGCTTGACTGCGACATTTGCATGAAGACATTTAAACACAAATTGAATTTAAGGGAGCACATGGCTGTACATTCGGCCTTAAAGTTTGACTGCGACATTTGCAAGAAGACATTTAAACACAAAAAGAGTTTAAGCAGGCACAGATCGGTTGCACATTCGGTTTTTAAGCTTGACTGCAACATTTGCAAGAAGACATTTAAATACAAAAAGACTTTAAGCAAGCACATGTCGGCTGTACATTTAGACTTTAAGCCAATTCCCACTTAG
- Protein Sequence
- MAETLNPIPFCRCCHKNGDFKCLFTDFIYENEIENYSQMLYDTFGILTTQFRSQMYVDCETKSSKTGAISFHLDLSRYQPTATHKFVPSIDDQIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCRARFGGRTSVTPDMKQETSEDEDSDTGIINEVSDEECDQKVKVEESGNKSDETWSESEEALIADDIKVETEEMVNNEDSGINKVLDEESNEDVRKEDSIINKVLDEAFNEDVRNEDSIINKVLDEAFNEDVRNEDSIMNKVLDEESNEEIEMKSDETLSDAGVTLRKASDIHEYKCDICNKTFKRKGNLENHVRTHKGSKRQTCPEILSNKRENAKHHQLKVHMDRQTHECQECGRKFTQKGSLLSHCRVVHMDLKKYSCRYCDKRIATKHNLAIHERTHTGEKPYVCEKCDKSFQSKKSLLNHNAVHLARKLYNCNVCNKAFMTKNHLNRHMVTHTGISSFECSVCSKSFALKYYLNKHMKSHNDKIYECDVCKKTFKCKQNLRRHISIVHNLGLKSMSTECDICKKTFKCKWSLSEHMSIIHLGFKHHCDICKKTFKYKKNLSEHMSVAHLGIKLDCDICKKTFKHKRYIRRHMLAVHLGFRRMSTECDICKKTFKCKQSLSEHMSVVHLGFKLDCDICKKTFKYKQTLSEHMSVVHLGFKFDCDICKKTFQTKRYLREHMSIAHLGFKMDCDICKKTFKYKSNLREHLSIAHSDFKLDCDICKKTFKYKHNLREHMSAVHFGFKFDCNICKKTFKHKSSLNRHMSAAHSALKLDCDICMKTFKHKLNLREHMAVHSALKFDCDICKKTFKHKKSLSRHRSVAHSVFKLDCNICKKTFKYKKTLSKHMSAVHLDFKPIPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387293;
- 90% Identity
- iTF_01387293;
- 80% Identity
- iTF_01387293;