Sfor012249.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000091.1:181607-183872[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.56 1.7e+03 -0.6 0.1 25 44 102 121 89 144 0.81 2 12 5.6 1.7e+04 -3.7 0.0 27 44 211 228 205 231 0.73 3 12 0.019 59 4.1 0.0 18 47 345 375 330 379 0.74 4 12 1.9 5.6e+03 -2.2 0.0 27 48 383 404 381 406 0.83 5 12 0.38 1.2e+03 -0.0 0.0 27 48 411 432 409 436 0.87 6 12 0.0026 7.8 6.9 0.0 24 48 437 461 416 465 0.85 7 12 0.0035 11 6.5 0.1 24 48 466 490 458 495 0.83 8 12 0.042 1.3e+02 3.1 0.1 24 48 495 519 487 525 0.83 9 12 0.27 8.2e+02 0.5 0.1 24 48 524 548 514 553 0.79 10 12 0.00097 2.9 8.3 0.0 14 49 542 578 532 582 0.80 11 12 0.032 98 3.4 0.2 26 52 583 609 579 611 0.90 12 12 0.00042 1.3 9.5 0.7 24 48 610 634 606 637 0.89
Sequence Information
- Coding Sequence
- ATGGCAGTCGACGTCAAAGTTGAAAGACTTGAAACAGCCAATGATGAACACAGAGACATAGGCGTAAATAGCGTATTAGATGTAGAGTCCGATGAAGATGTCACAATTGAAGAGACCAAAAAGGAAACAGATGACACCTGTAGTGAATCTGACGGACCGTTGATTAAAGTCGACGTAAAAGTTGAAAGGGAAGAGACTCCCACTCTCAACGATGAAGACAATCACTCGGATATAAATGCGGTTTTAGATGAAGTATCCAATCAAGATGGCAGCTTCAGTGAATCTGAGAACGACAGACACGATAATAAATGCAATATTTGCAATAAAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATCAGATCTCACAAAGGCTATCAATGCCAAATGTGTCCAGAAATATTGTCGAATCAGAGAGAACACTCGGAACACATAAAGTCGGAGCCCGTAATCGACGCCAAATATTGGTGTATCGCTTGCGATGCGACTTTTTTAGAAGTGAACAAGCTAAAATGTCACATCAAAACGCATTTTAAACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAATGCTCAATATCTAATGATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACGGAGCACCGCACGAGTGCCAAGAGTGCGGCCGGAAATTCAAAGTCAAAAATAGCTTATTGAGGCATCGTCAAAATATGCACATGGCTGTAAACAAGTACAGTTGCCAGTATCAGTGTCAAAAATGCAATAAATCGTTTAGAAGCAAATTTACTTTGGTAAGTCATAATAAAGTGCATGAGAAACATGAGCCTTACAATTGTAATCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGATGCATGCTGAGATAAAAGAGGGTAACATTTGCAAGAAGACATTTAAACACAAACAGAGTTTAAGCAGTCACATGTCGGCTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAAAAGATATTTAAATCCAAGAAGATTATACGCAATCACATGCTGGCCGTACATTTAGGCCTTAAGTTTAAGTGCGACATATGCAAGAAGATTTTTAAACGCAAACAGGTTTTAAGCATTCACATGTCTGCTGTACATTTGGGCTTTAAGTTTAAGTGCGACATTTGCAAAAAGACATTTAAACACAAACAGAATTTAAGCATTCACATGTCGGCTGTACATTCGGACCTTCCACCCTCACAGTGCGACATTTGCAAAAAGACATTTAAATACAAAAATAATTTAAGCAGGCACATGTCGACTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAAAAGACATTTAAACACAAACGGAATTTAAGCATTCACATGTCGGCTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAAAAGACATTTAAACACAAACGGAGTTTAAGCATTCACATGTCGGCTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAGAAGACATATAACAATAAACAGGGTTTAAGCAAGCACATGTCGGCTGTACATTCGGACCTTCCACCCTCACAGTGCGACATTTGCAAAAAGACATTTAAATACAAAAGTAATTTAAGCAGGCACATGTCGGCTGAACATTTGGGATTTAAGCTTAAGTGCGATATTTGCAAGAAGACATTTAAATCCAAGCGTTATATACGCCAGCACATGTTGGCTGTACATTTGGACCGTCCACCAGCTCAGTGCTACATTTGCAAGAAGACATTTAAATACGAACGGAGTTTAAGAAGGCATAGGTCGACTGTACATTTGGGCTTGAAGCGAACACGCACTAAAAGAAAAGTTATCTAA
- Protein Sequence
- MAVDVKVERLETANDEHRDIGVNSVLDVESDEDVTIEETKKETDDTCSESDGPLIKVDVKVEREETPTLNDEDNHSDINAVLDEVSNQDGSFSESENDRHDNKCNICNKTFRFKKYLESHIRSHKGYQCQMCPEILSNQREHSEHIKSEPVIDAKYWCIACDATFLEVNKLKCHIKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSISNDGFTLSRSLKAHMKTHKDGAPHECQECGRKFKVKNSLLRHRQNMHMAVNKYSCQYQCQKCNKSFRSKFTLVSHNKVHEKHEPYNCNLRENRFKRRENFNRQMLMHAEIKEGNICKKTFKHKQSLSSHMSAVHSDLPPTQCDICKKIFKSKKIIRNHMLAVHLGLKFKCDICKKIFKRKQVLSIHMSAVHLGFKFKCDICKKTFKHKQNLSIHMSAVHSDLPPSQCDICKKTFKYKNNLSRHMSTVHSDLPPTQCDICKKTFKHKRNLSIHMSAVHSDLPPTQCDICKKTFKHKRSLSIHMSAVHSDLPPTQCDICKKTYNNKQGLSKHMSAVHSDLPPSQCDICKKTFKYKSNLSRHMSAEHLGFKLKCDICKKTFKSKRYIRQHMLAVHLDRPPAQCYICKKTFKYERSLRRHRSTVHLGLKRTRTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386939;
- 90% Identity
- iTF_01386939;
- 80% Identity
- iTF_01386939;