Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000091.1:181607-183872[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2e-06 0.00012 22.6 2.9 2 23 103 124 102 124 0.98

2 17 0.66 38 5.3 0.2 1 21 127 147 127 148 0.87

3 17 0.00045 0.026 15.2 1.3 1 23 181 203 181 203 0.97

4 17 0.22 12 6.8 0.3 10 23 218 231 217 231 0.92

5 17 7.6e-05 0.0043 17.7 3.0 1 23 237 260 237 260 0.95

6 17 3.2e-05 0.0018 18.9 3.5 1 23 270 292 270 292 0.98

7 17 0.0013 0.074 13.8 1.5 5 23 328 347 327 347 0.92

8 17 0.0066 0.37 11.6 0.6 2 23 354 376 353 376 0.92

9 17 3.9e-05 0.0022 18.6 0.6 1 23 381 404 381 404 0.95

10 17 1.8e-06 0.0001 22.8 2.8 1 23 409 432 409 432 0.95

11 17 6.1e-07 3.5e-05 24.2 2.2 2 23 439 461 438 461 0.97

12 17 6.4e-06 0.00037 21.0 2.4 2 23 468 490 467 490 0.94

13 17 1.8e-05 0.0011 19.6 2.4 2 23 497 519 496 519 0.94

14 17 4.6e-05 0.0026 18.3 0.7 2 23 526 548 525 548 0.94

15 17 4.6e-07 2.6e-05 24.6 1.5 2 23 555 577 554 577 0.94

16 17 3.6e-05 0.0021 18.7 1.3 2 23 583 605 582 605 0.94

17 17 5.7e-05 0.0033 18.0 2.8 2 23 612 634 612 634 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2e-06	0.00012	22.6	2.9	2	23	103	124	102	124	0.98
2	17	0.66	38	5.3	0.2	1	21	127	147	127	148	0.87
3	17	0.00045	0.026	15.2	1.3	1	23	181	203	181	203	0.97
4	17	0.22	12	6.8	0.3	10	23	218	231	217	231	0.92
5	17	7.6e-05	0.0043	17.7	3.0	1	23	237	260	237	260	0.95
6	17	3.2e-05	0.0018	18.9	3.5	1	23	270	292	270	292	0.98
7	17	0.0013	0.074	13.8	1.5	5	23	328	347	327	347	0.92
8	17	0.0066	0.37	11.6	0.6	2	23	354	376	353	376	0.92
9	17	3.9e-05	0.0022	18.6	0.6	1	23	381	404	381	404	0.95
10	17	1.8e-06	0.0001	22.8	2.8	1	23	409	432	409	432	0.95
11	17	6.1e-07	3.5e-05	24.2	2.2	2	23	439	461	438	461	0.97
12	17	6.4e-06	0.00037	21.0	2.4	2	23	468	490	467	490	0.94
13	17	1.8e-05	0.0011	19.6	2.4	2	23	497	519	496	519	0.94
14	17	4.6e-05	0.0026	18.3	0.7	2	23	526	548	525	548	0.94
15	17	4.6e-07	2.6e-05	24.6	1.5	2	23	555	577	554	577	0.94
16	17	3.6e-05	0.0021	18.7	1.3	2	23	583	605	582	605	0.94
17	17	5.7e-05	0.0033	18.0	2.8	2	23	612	634	612	634	0.97

Sequence Information

Coding Sequence: ATGGCAGTCGACGTCAAAGTTGAAAGACTTGAAACAGCCAATGATGAACACAGAGACATAGGCGTAAATAGCGTATTAGATGTAGAGTCCGATGAAGATGTCACAATTGAAGAGACCAAAAAGGAAACAGATGACACCTGTAGTGAATCTGACGGACCGTTGATTAAAGTCGACGTAAAAGTTGAAAGGGAAGAGACTCCCACTCTCAACGATGAAGACAATCACTCGGATATAAATGCGGTTTTAGATGAAGTATCCAATCAAGATGGCAGCTTCAGTGAATCTGAGAACGACAGACACGATAATAAATGCAATATTTGCAATAAAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATCAGATCTCACAAAGGCTATCAATGCCAAATGTGTCCAGAAATATTGTCGAATCAGAGAGAACACTCGGAACACATAAAGTCGGAGCCCGTAATCGACGCCAAATATTGGTGTATCGCTTGCGATGCGACTTTTTTAGAAGTGAACAAGCTAAAATGTCACATCAAAACGCATTTTAAACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAATGCTCAATATCTAATGATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACGGAGCACCGCACGAGTGCCAAGAGTGCGGCCGGAAATTCAAAGTCAAAAATAGCTTATTGAGGCATCGTCAAAATATGCACATGGCTGTAAACAAGTACAGTTGCCAGTATCAGTGTCAAAAATGCAATAAATCGTTTAGAAGCAAATTTACTTTGGTAAGTCATAATAAAGTGCATGAGAAACATGAGCCTTACAATTGTAATCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGATGCATGCTGAGATAAAAGAGGGTAACATTTGCAAGAAGACATTTAAACACAAACAGAGTTTAAGCAGTCACATGTCGGCTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAAAAGATATTTAAATCCAAGAAGATTATACGCAATCACATGCTGGCCGTACATTTAGGCCTTAAGTTTAAGTGCGACATATGCAAGAAGATTTTTAAACGCAAACAGGTTTTAAGCATTCACATGTCTGCTGTACATTTGGGCTTTAAGTTTAAGTGCGACATTTGCAAAAAGACATTTAAACACAAACAGAATTTAAGCATTCACATGTCGGCTGTACATTCGGACCTTCCACCCTCACAGTGCGACATTTGCAAAAAGACATTTAAATACAAAAATAATTTAAGCAGGCACATGTCGACTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAAAAGACATTTAAACACAAACGGAATTTAAGCATTCACATGTCGGCTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAAAAGACATTTAAACACAAACGGAGTTTAAGCATTCACATGTCGGCTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAGAAGACATATAACAATAAACAGGGTTTAAGCAAGCACATGTCGGCTGTACATTCGGACCTTCCACCCTCACAGTGCGACATTTGCAAAAAGACATTTAAATACAAAAGTAATTTAAGCAGGCACATGTCGGCTGAACATTTGGGATTTAAGCTTAAGTGCGATATTTGCAAGAAGACATTTAAATCCAAGCGTTATATACGCCAGCACATGTTGGCTGTACATTTGGACCGTCCACCAGCTCAGTGCTACATTTGCAAGAAGACATTTAAATACGAACGGAGTTTAAGAAGGCATAGGTCGACTGTACATTTGGGCTTGAAGCGAACACGCACTAAAAGAAAAGTTATCTAA
Protein Sequence: MAVDVKVERLETANDEHRDIGVNSVLDVESDEDVTIEETKKETDDTCSESDGPLIKVDVKVEREETPTLNDEDNHSDINAVLDEVSNQDGSFSESENDRHDNKCNICNKTFRFKKYLESHIRSHKGYQCQMCPEILSNQREHSEHIKSEPVIDAKYWCIACDATFLEVNKLKCHIKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSISNDGFTLSRSLKAHMKTHKDGAPHECQECGRKFKVKNSLLRHRQNMHMAVNKYSCQYQCQKCNKSFRSKFTLVSHNKVHEKHEPYNCNLRENRFKRRENFNRQMLMHAEIKEGNICKKTFKHKQSLSSHMSAVHSDLPPTQCDICKKIFKSKKIIRNHMLAVHLGLKFKCDICKKIFKRKQVLSIHMSAVHLGFKFKCDICKKTFKHKQNLSIHMSAVHSDLPPSQCDICKKTFKYKNNLSRHMSTVHSDLPPTQCDICKKTFKHKRNLSIHMSAVHSDLPPTQCDICKKTFKHKRSLSIHMSAVHSDLPPTQCDICKKTYNNKQGLSKHMSAVHSDLPPSQCDICKKTFKYKSNLSRHMSAEHLGFKLKCDICKKTFKSKRYIRQHMLAVHLDRPPAQCYICKKTFKYERSLRRHRSTVHLGLKRTRTKRKVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387292;
90% Identity: iTF_01387292;
80% Identity: iTF_01387292;