Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000091.1:160981-162663[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.035 1e+02 3.3 0.0 22 47 32 57 16 63 0.85

2 15 0.59 1.8e+03 -0.6 0.0 38 49 141 152 137 158 0.80

3 15 0.0015 4.6 7.7 0.1 26 49 162 185 155 191 0.87

4 15 0.041 1.2e+02 3.1 0.1 26 48 195 217 190 221 0.87

5 15 0.21 6.2e+02 0.8 0.0 24 48 224 248 220 253 0.84

6 15 0.017 50 4.3 0.1 23 48 256 281 250 286 0.82

7 15 0.011 33 4.9 0.0 24 48 290 314 283 317 0.84

8 15 0.095 2.9e+02 1.9 0.1 27 49 321 343 318 347 0.89

9 15 0.017 51 4.3 0.0 24 48 349 373 344 377 0.86

10 15 0.0086 26 5.3 0.1 26 49 381 404 376 407 0.89

11 15 0.038 1.1e+02 3.2 0.1 25 48 408 431 405 435 0.90

12 15 0.078 2.4e+02 2.2 0.0 26 48 440 462 432 466 0.85

13 15 0.00098 3 8.3 0.1 7 48 449 491 444 495 0.78

14 15 2.9 8.8e+03 -2.8 0.0 27 44 498 515 496 520 0.80

15 15 3.6 1.1e+04 -3.1 0.1 27 44 526 543 525 548 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.035	1e+02	3.3	0.0	22	47	32	57	16	63	0.85
2	15	0.59	1.8e+03	-0.6	0.0	38	49	141	152	137	158	0.80
3	15	0.0015	4.6	7.7	0.1	26	49	162	185	155	191	0.87
4	15	0.041	1.2e+02	3.1	0.1	26	48	195	217	190	221	0.87
5	15	0.21	6.2e+02	0.8	0.0	24	48	224	248	220	253	0.84
6	15	0.017	50	4.3	0.1	23	48	256	281	250	286	0.82
7	15	0.011	33	4.9	0.0	24	48	290	314	283	317	0.84
8	15	0.095	2.9e+02	1.9	0.1	27	49	321	343	318	347	0.89
9	15	0.017	51	4.3	0.0	24	48	349	373	344	377	0.86
10	15	0.0086	26	5.3	0.1	26	49	381	404	376	407	0.89
11	15	0.038	1.1e+02	3.2	0.1	25	48	408	431	405	435	0.90
12	15	0.078	2.4e+02	2.2	0.0	26	48	440	462	432	466	0.85
13	15	0.00098	3	8.3	0.1	7	48	449	491	444	495	0.78
14	15	2.9	8.8e+03	-2.8	0.0	27	44	498	515	496	520	0.80
15	15	3.6	1.1e+04	-3.1	0.1	27	44	526	543	525	548	0.72

Sequence Information

Coding Sequence: ATGAAGACGCACTTTAAACATCGCTGTGAAGTATGCAGTAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAATGCTCAATATGTAATAATGGATTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGTTGGAACACCGCACGAGTGCCAAGAGTGCGGCCGGAAATTCAAAGTCAAAAATAGCTTATTGAGGCATTGTCAAAACATGCACACGGGTGTAAACAAGTACAGTTGCCAGTATCAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGCTTTGCTAAGTCATAAAAAAGTGCATGAGAAACATGAGCCTTACAATTGTGACCTGCGTGAAAATAAATTCAAAAGAAGAGAAAATTCCAAGCAAAATCTACGCAGTCATATGTCGGTTGTACATTTGGGCATTAAGCCAACGGCCACTACAATTGAGTGCCAAATTTGCAAAAAGACATATAAATCTAATAAAACTCTACGCAGGCACATGTCGGTTGTACATTTGGGCATTAAGCCAAAGCCCACTGCTGTTGAGTGCCACATTTGCAAAAAGACATTTAATTTCAAACAGAATTTAAGCAGGCACATATCGGCTGTACATTTGGGTTCTGAGTTAACACCCCTAGAATGTGACATTTGTAAAAAGACATTTAAATCCAAGGAGACTATACGCCAGCACATGTTGGCTGTACATTTGGGCTTGAAGCAAACACGCACTGCCACTGAGTGCAACATTTGCAAAAAGACATTTAAATCCAAGTCTAATATACGCCAGCACATGTTGGCTGTACATTTAGGCTTGAAGCAAACACGCACTGTCACTGAGTGCGACATTTGCATGAAGACATTTAAATACAAATATAATTTAAGCAGGCACATTTCAGCTGTACATTTGGGCTTTAAGCTTAAGTGCGACATTTGCAAACAGATATTTAAATCCAAACAGATTTTAAGCAGGCACATGTCGGCTGTACATTTGGGTTCTGAGTTAACACCCCTTGAATGTGACATTTGCAAAAAGGCATTTAAATCCAAGTCTAATATACGCCAGCACATGTTGGCTGTACATTTGGGCGTTAATACTGCAATTGAGTGCCACATTTGCAAAAAGACATTTAAATACAAACAGAATTTAAGCAGGCACATGTCTGCTGAACATTTGGGCCTTAAGGCTCAGTGCGAAATTTGCAAGAAGATATTTAAACACAAGAATAGTGTGCGCCAGCACATGTTGGTTGTACATGTTGGCTTTAATCCAACGGCCACTGATTGCGACATTTGCATGAAGACATTTAAATATAAACAGGGTTTAAACAGGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATCCAAGGATAATATACGCCAGCACATGTTGGCTATGCATTTGGGCTCTAAGTTTAAGTGCGACATATGCAAGAAGACATTTAAAACCAAGAATTATATACGCATGCACATGTTGGCTGTACATTTGGGCTTTAAGTTTAAGTGCGACATATGCAACAAGACATTTATATACAAACAGAGTTTAAGCAGGCATAAGTCGACTGTACATTTGGGCTTGAAGCAAATACGTACTAAAAGAAAAGTTATTTAA
Protein Sequence: MKTHFKHRCEVCSRDYQSKGELRKHEMVHKDERKFKCSICNNGFTLSRSLKAHMKTHKVGTPHECQECGRKFKVKNSLLRHCQNMHTGVNKYSCQYQCEKCNKSFRSKDALLSHKKVHEKHEPYNCDLRENKFKRRENSKQNLRSHMSVVHLGIKPTATTIECQICKKTYKSNKTLRRHMSVVHLGIKPKPTAVECHICKKTFNFKQNLSRHISAVHLGSELTPLECDICKKTFKSKETIRQHMLAVHLGLKQTRTATECNICKKTFKSKSNIRQHMLAVHLGLKQTRTVTECDICMKTFKYKYNLSRHISAVHLGFKLKCDICKQIFKSKQILSRHMSAVHLGSELTPLECDICKKAFKSKSNIRQHMLAVHLGVNTAIECHICKKTFKYKQNLSRHMSAEHLGLKAQCEICKKIFKHKNSVRQHMLVVHVGFNPTATDCDICMKTFKYKQGLNRHMSAVHSDLPPTQCDICMKTFKSKDNIRQHMLAMHLGSKFKCDICKKTFKTKNYIRMHMLAVHLGFKFKCDICNKTFIYKQSLSRHKSTVHLGLKQIRTKRKVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386901;
90% Identity: iTF_01386901;
80% Identity: iTF_01386901;