Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000091.1:160981-162663[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.85 6e+02 0.8 0.7 13 29 3 19 1 26 0.82

2 18 0.029 21 5.5 1.9 12 41 30 56 22 58 0.79

3 18 3.5 2.4e+03 -1.1 3.4 18 43 64 86 58 87 0.86

4 18 1.7 1.2e+03 -0.2 1.0 18 29 97 108 93 118 0.83

5 18 0.15 1e+02 3.3 0.8 19 43 126 151 109 152 0.80

6 18 0.00015 0.1 12.8 4.0 14 43 158 184 151 185 0.85

7 18 0.00025 0.18 12.1 2.2 13 43 190 217 183 218 0.87

8 18 0.019 13 6.1 0.7 18 39 226 244 221 249 0.77

9 18 0.0001 0.072 13.3 3.3 13 43 254 281 248 282 0.85

10 18 4.4e-05 0.031 14.5 1.7 12 43 286 314 281 315 0.88

11 18 0.017 12 6.3 0.4 16 43 318 342 316 343 0.86

12 18 0.0018 1.3 9.4 0.1 18 43 351 373 345 374 0.86

13 18 2e-05 0.014 15.6 2.2 15 43 378 403 376 404 0.92

14 18 0.0045 3.2 8.1 1.6 16 32 407 423 405 432 0.82

15 18 7.5e-05 0.053 13.8 0.2 6 44 431 463 428 463 0.89

16 18 0.0023 1.6 9.0 0.2 18 43 469 491 467 492 0.89

17 18 0.064 45 4.4 1.6 16 29 495 508 493 523 0.82

18 18 0.032 22 5.4 1.3 16 35 523 539 513 547 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.85	6e+02	0.8	0.7	13	29	3	19	1	26	0.82
2	18	0.029	21	5.5	1.9	12	41	30	56	22	58	0.79
3	18	3.5	2.4e+03	-1.1	3.4	18	43	64	86	58	87	0.86
4	18	1.7	1.2e+03	-0.2	1.0	18	29	97	108	93	118	0.83
5	18	0.15	1e+02	3.3	0.8	19	43	126	151	109	152	0.80
6	18	0.00015	0.1	12.8	4.0	14	43	158	184	151	185	0.85
7	18	0.00025	0.18	12.1	2.2	13	43	190	217	183	218	0.87
8	18	0.019	13	6.1	0.7	18	39	226	244	221	249	0.77
9	18	0.0001	0.072	13.3	3.3	13	43	254	281	248	282	0.85
10	18	4.4e-05	0.031	14.5	1.7	12	43	286	314	281	315	0.88
11	18	0.017	12	6.3	0.4	16	43	318	342	316	343	0.86
12	18	0.0018	1.3	9.4	0.1	18	43	351	373	345	374	0.86
13	18	2e-05	0.014	15.6	2.2	15	43	378	403	376	404	0.92
14	18	0.0045	3.2	8.1	1.6	16	32	407	423	405	432	0.82
15	18	7.5e-05	0.053	13.8	0.2	6	44	431	463	428	463	0.89
16	18	0.0023	1.6	9.0	0.2	18	43	469	491	467	492	0.89
17	18	0.064	45	4.4	1.6	16	29	495	508	493	523	0.82
18	18	0.032	22	5.4	1.3	16	35	523	539	513	547	0.79

Sequence Information

Coding Sequence: ATGAAGACGCACTTTAAACATCGCTGTGAAGTATGCAGTAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAATGCTCAATATGTAATAATGGATTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGTTGGAACACCGCACGAGTGCCAAGAGTGCGGCCGGAAATTCAAAGTCAAAAATAGCTTATTGAGGCATTGTCAAAACATGCACACGGGTGTAAACAAGTACAGTTGCCAGTATCAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGCTTTGCTAAGTCATAAAAAAGTGCATGAGAAACATGAGCCTTACAATTGTGACCTGCGTGAAAATAAATTCAAAAGAAGAGAAAATTCCAAGCAAAATCTACGCAGTCATATGTCGGTTGTACATTTGGGCATTAAGCCAACGGCCACTACAATTGAGTGCCAAATTTGCAAAAAGACATATAAATCTAATAAAACTCTACGCAGGCACATGTCGGTTGTACATTTGGGCATTAAGCCAAAGCCCACTGCTGTTGAGTGCCACATTTGCAAAAAGACATTTAATTTCAAACAGAATTTAAGCAGGCACATATCGGCTGTACATTTGGGTTCTGAGTTAACACCCCTAGAATGTGACATTTGTAAAAAGACATTTAAATCCAAGGAGACTATACGCCAGCACATGTTGGCTGTACATTTGGGCTTGAAGCAAACACGCACTGCCACTGAGTGCAACATTTGCAAAAAGACATTTAAATCCAAGTCTAATATACGCCAGCACATGTTGGCTGTACATTTAGGCTTGAAGCAAACACGCACTGTCACTGAGTGCGACATTTGCATGAAGACATTTAAATACAAATATAATTTAAGCAGGCACATTTCAGCTGTACATTTGGGCTTTAAGCTTAAGTGCGACATTTGCAAACAGATATTTAAATCCAAACAGATTTTAAGCAGGCACATGTCGGCTGTACATTTGGGTTCTGAGTTAACACCCCTTGAATGTGACATTTGCAAAAAGGCATTTAAATCCAAGTCTAATATACGCCAGCACATGTTGGCTGTACATTTGGGCGTTAATACTGCAATTGAGTGCCACATTTGCAAAAAGACATTTAAATACAAACAGAATTTAAGCAGGCACATGTCTGCTGAACATTTGGGCCTTAAGGCTCAGTGCGAAATTTGCAAGAAGATATTTAAACACAAGAATAGTGTGCGCCAGCACATGTTGGTTGTACATGTTGGCTTTAATCCAACGGCCACTGATTGCGACATTTGCATGAAGACATTTAAATATAAACAGGGTTTAAACAGGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATCCAAGGATAATATACGCCAGCACATGTTGGCTATGCATTTGGGCTCTAAGTTTAAGTGCGACATATGCAAGAAGACATTTAAAACCAAGAATTATATACGCATGCACATGTTGGCTGTACATTTGGGCTTTAAGTTTAAGTGCGACATATGCAACAAGACATTTATATACAAACAGAGTTTAAGCAGGCATAAGTCGACTGTACATTTGGGCTTGAAGCAAATACGTACTAAAAGAAAAGTTATTTAA
Protein Sequence: MKTHFKHRCEVCSRDYQSKGELRKHEMVHKDERKFKCSICNNGFTLSRSLKAHMKTHKVGTPHECQECGRKFKVKNSLLRHCQNMHTGVNKYSCQYQCEKCNKSFRSKDALLSHKKVHEKHEPYNCDLRENKFKRRENSKQNLRSHMSVVHLGIKPTATTIECQICKKTYKSNKTLRRHMSVVHLGIKPKPTAVECHICKKTFNFKQNLSRHISAVHLGSELTPLECDICKKTFKSKETIRQHMLAVHLGLKQTRTATECNICKKTFKSKSNIRQHMLAVHLGLKQTRTVTECDICMKTFKYKYNLSRHISAVHLGFKLKCDICKQIFKSKQILSRHMSAVHLGSELTPLECDICKKAFKSKSNIRQHMLAVHLGVNTAIECHICKKTFKYKQNLSRHMSAEHLGLKAQCEICKKIFKHKNSVRQHMLVVHVGFNPTATDCDICMKTFKYKQGLNRHMSAVHSDLPPTQCDICMKTFKSKDNIRQHMLAMHLGSKFKCDICKKTFKTKNYIRMHMLAVHLGFKFKCDICNKTFIYKQSLSRHKSTVHLGLKQIRTKRKVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386933; iTF_01387291;
90% Identity: iTF_01386933; iTF_01387291;
80% Identity: iTF_01386933; iTF_01387291;