Sfor012242.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000091.1:134513-137364[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.21 6.4e+02 0.8 0.1 25 48 164 186 146 193 0.77 2 9 0.05 1.5e+02 2.8 0.0 22 45 214 237 199 244 0.87 3 9 0.00052 1.6 9.2 0.1 26 49 344 367 338 373 0.86 4 9 0.022 67 3.9 0.1 25 48 376 399 370 404 0.86 5 9 0.0064 19 5.7 0.0 24 49 408 433 401 436 0.85 6 9 0.35 1.1e+03 0.1 0.0 27 45 439 457 434 462 0.88 7 9 0.013 39 4.7 0.0 21 49 463 492 458 498 0.83 8 9 0.003 9.1 6.7 0.1 26 48 502 524 495 529 0.87 9 9 0.0026 8 6.9 0.2 24 48 529 553 521 557 0.83
Sequence Information
- Coding Sequence
- ATGGCTGCAACACAAACACCGTTATGCAGATGTTGTCACAAGAATGGCGTATTCAAGAGTCTCTTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAAATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAAAGTGATAATTTATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAGAAAATGTGGAGTTATGCTTGCAGCGATAAAGAAGGACCGTTAATGGCAGTCGACGTAAAAGTTGAAAGGGAAGAGACTCCCACTCTCAACGATGAAGACAATCACTCGGATATAAATGCGGTTTTAGATGAAGTATCCAATCAAGATGGCAGTATTGAAGAAAGCCGAAACAAATCAGGTGAATCCGAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAAACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAATGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGATGGAACACCGCACGAGTGCCAAGAGTGCGGCCGGCAATTCAAAGTAAAAAATAGCTTATTGAGGCATCGTCAAAACATGCACACGGGTGTAAACAAGTACAGTTGCCAGTATCAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAATTTGCTTTGGTAAGTCATAATAAAGTGCATGAGAAACTTGAGCCTCACAATTGTAACCTGCGTGAAAATAGATTTAAAGGAAGAGAAAATTCCAAGCAAAGTCTACGCAGTCATATGTCGGTTGTACATTTGGGCATTAAACCAACGCCCACTGTCACTAAGTGCGACATTTGCATGAAGACATTTAAAAACAAACAGAATTTAAGAAGGCATAAATCGACTGTACATTTGGGCATTAAGCCAACGCCCACTGCCAGTAAGTGCGACATTTGCAAAAAGACATTTAAATACAAACAGAGTTTAAGAAGGCATAAATCGACTGTACATTTGGGCATTAAGCAAACGCCCACTGCCAGTGAGTGCGAAATTTGCAAAAAGACATTTAAATACAAACAGAATTTAGGCAGGCACATGTCGGCTTCACATTTGGGCATTAAGTTGAAGTGCGAAATATGCAAGAAGACATTTAAATACCATAGGAGTTTAAGCAAGCACATGTTGGCTGTACATTCGGGCTCCGAGTTAACGCCCTTTGAATGCGAAGTTTGCAAAAAGGCATTTAAATACAAACAGAATTTAGGCAGGCACAAGTCTGTTGTACATTTGGGCTTTAAGCCAACGCCCACTGCCAGTGAGTGCGACATATGCAAGAAGACATTTAAATTCAAGCGTAATATACGCCAGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGAAATTTGCAGGAAGACATTTAAATACAAACATAATTTAAAAAGGCATAAGTCGACTGTACATTTGGGATTGAAGCAAATATGCACTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHATFGILFEPSESDNLYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKMWSYACSDKEGPLMAVDVKVEREETPTLNDEDNHSDINAVLDEVSNQDGSIEESRNKSGESENDRHENKCNICNKTFRFKKYLESHMKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSICNNGFTLSRSLKAHMKTHKDGTPHECQECGRQFKVKNSLLRHRQNMHTGVNKYSCQYQCEKCNKSFRSKFALVSHNKVHEKLEPHNCNLRENRFKGRENSKQSLRSHMSVVHLGIKPTPTVTKCDICMKTFKNKQNLRRHKSTVHLGIKPTPTASKCDICKKTFKYKQSLRRHKSTVHLGIKQTPTASECEICKKTFKYKQNLGRHMSASHLGIKLKCEICKKTFKYHRSLSKHMLAVHSGSELTPFECEVCKKAFKYKQNLGRHKSVVHLGFKPTPTASECDICKKTFKFKRNIRQHMSAVHSDLPPTQCEICRKTFKYKHNLKRHKSTVHLGLKQICTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386947;
- 90% Identity
- iTF_01386947;
- 80% Identity
- iTF_01386947;