Sfor012242.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000091.1:134513-137364[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.2e-06 6.6e-05 23.4 3.7 2 23 165 186 164 186 0.98 2 13 0.00039 0.022 15.4 1.3 1 23 189 211 189 211 0.97 3 13 1e-05 0.00057 20.4 1.4 1 23 217 239 217 239 0.99 4 13 0.00011 0.0061 17.2 2.6 1 23 245 268 245 268 0.95 5 13 8.7e-06 0.00049 20.6 2.0 1 23 278 300 278 300 0.98 6 13 8.9 5e+02 1.7 0.3 12 23 321 333 320 333 0.87 7 13 5e-05 0.0028 18.2 3.0 2 23 344 366 343 366 0.96 8 13 1.2e-05 0.0007 20.1 3.4 2 23 377 399 376 399 0.96 9 13 1.1e-05 0.0006 20.4 1.0 2 23 410 432 409 432 0.93 10 13 2.7e-05 0.0015 19.1 2.7 2 23 438 460 437 460 0.94 11 13 3.2e-05 0.0018 18.8 0.9 1 23 468 491 468 491 0.95 12 13 7.7e-05 0.0044 17.6 1.2 2 23 502 524 501 524 0.93 13 13 1.4e-05 0.00079 20.0 5.2 2 23 531 553 530 553 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCAACACAAACACCGTTATGCAGATGTTGTCACAAGAATGGCGTATTCAAGAGTCTCTTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAAATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAAAGTGATAATTTATATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAGAAAATGTGGAGTTATGCTTGCAGCGATAAAGAAGGACCGTTAATGGCAGTCGACGTAAAAGTTGAAAGGGAAGAGACTCCCACTCTCAACGATGAAGACAATCACTCGGATATAAATGCGGTTTTAGATGAAGTATCCAATCAAGATGGCAGTATTGAAGAAAGCCGAAACAAATCAGGTGAATCCGAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAAACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAATGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGATGGAACACCGCACGAGTGCCAAGAGTGCGGCCGGCAATTCAAAGTAAAAAATAGCTTATTGAGGCATCGTCAAAACATGCACACGGGTGTAAACAAGTACAGTTGCCAGTATCAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAATTTGCTTTGGTAAGTCATAATAAAGTGCATGAGAAACTTGAGCCTCACAATTGTAACCTGCGTGAAAATAGATTTAAAGGAAGAGAAAATTCCAAGCAAAGTCTACGCAGTCATATGTCGGTTGTACATTTGGGCATTAAACCAACGCCCACTGTCACTAAGTGCGACATTTGCATGAAGACATTTAAAAACAAACAGAATTTAAGAAGGCATAAATCGACTGTACATTTGGGCATTAAGCCAACGCCCACTGCCAGTAAGTGCGACATTTGCAAAAAGACATTTAAATACAAACAGAGTTTAAGAAGGCATAAATCGACTGTACATTTGGGCATTAAGCAAACGCCCACTGCCAGTGAGTGCGAAATTTGCAAAAAGACATTTAAATACAAACAGAATTTAGGCAGGCACATGTCGGCTTCACATTTGGGCATTAAGTTGAAGTGCGAAATATGCAAGAAGACATTTAAATACCATAGGAGTTTAAGCAAGCACATGTTGGCTGTACATTCGGGCTCCGAGTTAACGCCCTTTGAATGCGAAGTTTGCAAAAAGGCATTTAAATACAAACAGAATTTAGGCAGGCACAAGTCTGTTGTACATTTGGGCTTTAAGCCAACGCCCACTGCCAGTGAGTGCGACATATGCAAGAAGACATTTAAATTCAAGCGTAATATACGCCAGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGAAATTTGCAGGAAGACATTTAAATACAAACATAATTTAAAAAGGCATAAGTCGACTGTACATTTGGGATTGAAGCAAATATGCACTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHATFGILFEPSESDNLYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKMWSYACSDKEGPLMAVDVKVEREETPTLNDEDNHSDINAVLDEVSNQDGSIEESRNKSGESENDRHENKCNICNKTFRFKKYLESHMKTHFKHRCEVCNRDYQSKGELRKHEMVHKDERKFKCSICNNGFTLSRSLKAHMKTHKDGTPHECQECGRQFKVKNSLLRHRQNMHTGVNKYSCQYQCEKCNKSFRSKFALVSHNKVHEKLEPHNCNLRENRFKGRENSKQSLRSHMSVVHLGIKPTPTVTKCDICMKTFKNKQNLRRHKSTVHLGIKPTPTASKCDICKKTFKYKQSLRRHKSTVHLGIKQTPTASECEICKKTFKYKQNLGRHMSASHLGIKLKCEICKKTFKYHRSLSKHMLAVHSGSELTPFECEVCKKAFKYKQNLGRHKSVVHLGFKPTPTASECDICKKTFKFKRNIRQHMSAVHSDLPPTQCEICRKTFKYKHNLKRHKSTVHLGLKQICTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387290;
- 90% Identity
- iTF_01387290;
- 80% Identity
- iTF_01387290;