Sfor002206.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000014.1:150531-157016[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.65 2e+03 -0.8 0.1 25 45 177 197 169 206 0.83 2 18 0.0019 5.9 7.3 0.1 21 50 367 396 362 401 0.91 3 18 0.15 4.6e+02 1.3 0.8 24 44 401 421 398 427 0.85 4 18 0.0025 7.5 7.0 0.0 27 48 432 453 429 456 0.89 5 18 0.096 2.9e+02 1.9 0.1 27 48 460 481 457 484 0.88 6 18 2.2 6.6e+03 -2.4 0.0 27 44 488 505 486 510 0.83 7 18 2 5.9e+03 -2.3 0.0 27 48 516 537 514 539 0.86 8 18 0.0012 3.5 8.0 0.0 23 48 545 570 542 573 0.90 9 18 0.6 1.8e+03 -0.6 0.1 27 48 577 598 575 605 0.88 10 18 2.5 7.6e+03 -2.6 0.0 24 49 605 630 600 636 0.76 11 18 0.012 37 4.8 0.1 26 52 637 664 632 666 0.86 12 18 0.013 38 4.7 0.1 26 52 667 694 663 696 0.86 13 18 0.021 62 4.1 0.1 26 48 697 719 693 726 0.86 14 18 0.0017 5.3 7.5 0.2 24 48 728 752 722 755 0.90 15 18 0.078 2.4e+02 2.2 0.1 27 48 759 780 756 784 0.90 16 18 0.19 5.8e+02 1.0 0.1 23 48 786 811 782 814 0.87 17 18 0.0012 3.5 8.0 0.0 23 48 819 844 816 847 0.90 18 18 0.089 2.7e+02 2.0 0.0 27 48 851 872 848 874 0.90
Sequence Information
- Coding Sequence
- ATGGCTGTTTACCAAACACCTTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTATCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGTATCTTATTTGTACCCTCCATAAATGAGAATATCTATACAATATGCGACGAGTGTATTGAAATATTACATATGTCAACGGAACTCAAGAATTGTGTGTTCGCCTGGGCAGTGACCCCAGATGTGAAACAAAATACCTCCGAAGATGAAGACAGTGACACGGATATGATAAATAAGGTTTTAGAGGACGAGTCAAATGAAGAGGTGAAAGTGGAAGAGAGCGGAGACAAATCGGACGAAACCTTCAGCGAATGTGAAGAATTTACAGTCAAAATCGAAGTTAAAGACGAGAGAGTCGATGATGAAGACTCTTGTATAGATAAAGTGTCAGACGAAGATGTCACAAGAACACACATTGAATCTGGTGTCAATTTAAGAAACACAAGCGACAAACATGTGAATAAATGCAATATTTGCAATAAAACTTTTGAACGCAAAGGGAATCTAGTAAATCATCTCAGAACTCACGAGGGCTTGAAATGCCAAATATGTCCAGATATCTTGTCGAATCAGATAGAGTACGATAAACACATGGAAATACACCCGGGCGGAATAATACACGAGTGCAAAGAGTGCGGTCGGACATTCGCAACCAAGGCAAACTTGCTGAGACACTGTCAAACCGTGCACATGGGTGTAAAAAAGTATAGTTGCCAGTATTGCGATAAAAGAATGACGACGAAAGCTAATTTGGTTGTACACGAAAGGAAACACACGAGTGTAAAACCGTATGTGTGCAAAAAATGCAATAAAGCGTTTAATAGTGAAGGGGCCTTACACAAACATAATGCAGTGCATTTGGCACATAGGCCTCACATTTGTAAAGTGTGTGATTATAGATTCAAAACAAAATACCATTGCCAAAGACATATGTTGACGCATACAGGGATCAAATGTTTCCAATGCAGTGTTTGTAGCAAGACTTTTGGACAAAAACATCTTCTCAGTAGCCACATGGCGGTCCATAATGACGAAAGACCCTACGAGTGCAAAATTTGTAAAAAGTTTTTTAATTCCGAGATGCACTTACGCGACCACATGTCGTCTGTACATTTTGCCTTTAAGCCACCACCCATTGAGTGCAATATTTGCAAAATGACTTTTAAATCCAGGCACCATATACGCAGGCACACGTTGGCTGTACATTTGGGCTTAACAATTGAGTGCGACATTTGTAAAAAGATATTTAAATCCAAGGCGAATATACGCCGGCACATGTCGACTGTACATTTGGGCTTTACATTTGAGTGCGACATCTGTAAAAAGACATTTAAATCCAAGGCAAATATACGCCAGCACATGTCGAATGTACATTTGGGCTGTACATTTGAGTGCGACATCTGTAAAAATACATTTAAATCCAAGGCGACAATACGCCAGCACATGTGGAATATACATTTGGGCTGTACATTTGAGTGCGACATCTGTAAGAAGACTTATAAATCCAATTATTATATGCGCCAGCACATGTCGGCTGTACATTTGGGTTTGGGCTTTAAGAAAACACCCGCTCAGTGTGAAATTTGCAAGAAGACATTTAAACAGAAAGGGACTTTACGCGATCACATGTCGGCTGTACATTTGGGCTTTAGATTTGAGTGCCACATTTGTAAGAAAACATTTAAATACAAGAATAATATACACAAACACATTTCGGCTGTACATTTGCGCTTTAACCCAACACCCATTGAGTGCGTCATTTGCAAAAAGACTTATAAATCCAAGCAGTATATGCTCCAGCACATGTCGGCTGTACATTTGGGCTTTAAACCATCCATTGAGTGCGATATTTGCAAAAAGACTTTTAAATCCAAGGCGAATATACGCAAGCACATGTTGGCTGTACATTTGGCCTTTAAGCCATCCATTGAGTGCGATATTTGCAAAAAGACTTTTAAATCCAAGGCGAATATACGTAAGCACATGTTGGCTGTACATTTGGCCTTTAAGCCATCCATTGAATGCGATATTTGCAAAAAGACTTTTAAATCAAAGTTCAATATACGCAGGCACATGTTGGCTGTACATTTGGGTTTGGCCCTTAAGCCAACACCCACTCAGTGTGAAATTTGCAAGAAGACATTTAAACACAAACAGACTTTACGCCGTCACATGTCGGCTGTACATTTGGGCTTTACATTTGAGTGCCACATTTGTAAGATGACATTTAAATACAAGGGTAATATACGCAAGCACATGTCGACTGTACATTTGGGCTTTAAGCAAACACCCACTGAGTGCGTCATTTGCAAAAAGACTTATAAATCCAATTATTATATGCGCCAGCACATGTCGGCTGTACATTTGGGTTTGGGCTTTAAGAAAACACCCGCTCAGTGTGAAATTTGCAAGAAGACATTTAAACAGAAAGGGACTTTACGCGATCACATGTCGGCTGTACATTTGGGCTTTAAATTTGAGTGCCACATTTGTAAGATGACATTTAAATACAAGGGTAATATACGCAAGCACATGTCGACTGTACATTTGGGCTTTAAGTAA
- Protein Sequence
- MAVYQTPLCRCCHKNGVFKSLFIDYIYNENEVENYSQMLHATFGILFVPSINENIYTICDECIEILHMSTELKNCVFAWAVTPDVKQNTSEDEDSDTDMINKVLEDESNEEVKVEESGDKSDETFSECEEFTVKIEVKDERVDDEDSCIDKVSDEDVTRTHIESGVNLRNTSDKHVNKCNICNKTFERKGNLVNHLRTHEGLKCQICPDILSNQIEYDKHMEIHPGGIIHECKECGRTFATKANLLRHCQTVHMGVKKYSCQYCDKRMTTKANLVVHERKHTSVKPYVCKKCNKAFNSEGALHKHNAVHLAHRPHICKVCDYRFKTKYHCQRHMLTHTGIKCFQCSVCSKTFGQKHLLSSHMAVHNDERPYECKICKKFFNSEMHLRDHMSSVHFAFKPPPIECNICKMTFKSRHHIRRHTLAVHLGLTIECDICKKIFKSKANIRRHMSTVHLGFTFECDICKKTFKSKANIRQHMSNVHLGCTFECDICKNTFKSKATIRQHMWNIHLGCTFECDICKKTYKSNYYMRQHMSAVHLGLGFKKTPAQCEICKKTFKQKGTLRDHMSAVHLGFRFECHICKKTFKYKNNIHKHISAVHLRFNPTPIECVICKKTYKSKQYMLQHMSAVHLGFKPSIECDICKKTFKSKANIRKHMLAVHLAFKPSIECDICKKTFKSKANIRKHMLAVHLAFKPSIECDICKKTFKSKFNIRRHMLAVHLGLALKPTPTQCEICKKTFKHKQTLRRHMSAVHLGFTFECHICKMTFKYKGNIRKHMSTVHLGFKQTPTECVICKKTYKSNYYMRQHMSAVHLGLGFKKTPAQCEICKKTFKQKGTLRDHMSAVHLGFKFECHICKMTFKYKGNIRKHMSTVHLGFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386929;
- 90% Identity
- iTF_01386929;
- 80% Identity
- iTF_01386929;