Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000014.1:150531-157016[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 1.8e-07 1e-05 25.9 1.5 2 23 178 199 177 199 0.98

2 24 0.3 17 6.3 0.1 2 23 203 224 202 224 0.96

3 24 2.5e-05 0.0014 19.2 3.3 1 23 230 253 230 253 0.92

4 24 9e-05 0.0051 17.4 1.1 1 23 259 281 259 281 0.98

5 24 0.00012 0.0068 17.0 1.0 1 23 287 309 287 309 0.95

6 24 0.0041 0.23 12.2 9.6 1 23 315 337 315 337 0.97

7 24 1.9e-05 0.0011 19.5 1.7 1 23 343 365 343 365 0.98

8 24 2.5e-05 0.0014 19.2 2.7 1 23 371 394 371 394 0.97

9 24 0.0014 0.079 13.7 3.1 2 23 403 425 402 425 0.92

10 24 3.9e-06 0.00022 21.7 0.5 2 23 431 453 430 453 0.96

11 24 3.9e-06 0.00022 21.7 1.0 1 23 458 481 458 481 0.96

12 24 0.003 0.17 12.7 0.5 1 20 486 505 486 509 0.96

13 24 3.4e-05 0.0019 18.8 1.3 1 23 514 537 514 537 0.94

14 24 5.3e-06 0.0003 21.3 0.8 2 23 548 570 548 570 0.94

15 24 0.00025 0.014 16.0 4.8 1 23 575 598 575 598 0.94

16 24 0.0015 0.086 13.6 0.4 2 23 607 629 606 629 0.93

17 24 5.9e-06 0.00034 21.1 0.4 2 23 637 659 636 659 0.94

18 24 5.9e-06 0.00034 21.1 0.4 2 23 667 689 666 689 0.94

19 24 8.7e-06 0.00049 20.6 0.7 2 23 697 719 696 719 0.94

20 24 6.7e-06 0.00038 21.0 3.5 2 23 730 752 729 752 0.94

21 24 1.4e-05 0.00082 19.9 3.3 1 23 757 780 757 780 0.98

22 24 0.00037 0.021 15.5 0.7 2 23 789 811 788 811 0.93

23 24 5.3e-06 0.0003 21.3 0.8 2 23 822 844 822 844 0.94

24 24 1.4e-05 0.00082 19.9 3.3 1 23 849 872 849 872 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	1.8e-07	1e-05	25.9	1.5	2	23	178	199	177	199	0.98
2	24	0.3	17	6.3	0.1	2	23	203	224	202	224	0.96
3	24	2.5e-05	0.0014	19.2	3.3	1	23	230	253	230	253	0.92
4	24	9e-05	0.0051	17.4	1.1	1	23	259	281	259	281	0.98
5	24	0.00012	0.0068	17.0	1.0	1	23	287	309	287	309	0.95
6	24	0.0041	0.23	12.2	9.6	1	23	315	337	315	337	0.97
7	24	1.9e-05	0.0011	19.5	1.7	1	23	343	365	343	365	0.98
8	24	2.5e-05	0.0014	19.2	2.7	1	23	371	394	371	394	0.97
9	24	0.0014	0.079	13.7	3.1	2	23	403	425	402	425	0.92
10	24	3.9e-06	0.00022	21.7	0.5	2	23	431	453	430	453	0.96
11	24	3.9e-06	0.00022	21.7	1.0	1	23	458	481	458	481	0.96
12	24	0.003	0.17	12.7	0.5	1	20	486	505	486	509	0.96
13	24	3.4e-05	0.0019	18.8	1.3	1	23	514	537	514	537	0.94
14	24	5.3e-06	0.0003	21.3	0.8	2	23	548	570	548	570	0.94
15	24	0.00025	0.014	16.0	4.8	1	23	575	598	575	598	0.94
16	24	0.0015	0.086	13.6	0.4	2	23	607	629	606	629	0.93
17	24	5.9e-06	0.00034	21.1	0.4	2	23	637	659	636	659	0.94
18	24	5.9e-06	0.00034	21.1	0.4	2	23	667	689	666	689	0.94
19	24	8.7e-06	0.00049	20.6	0.7	2	23	697	719	696	719	0.94
20	24	6.7e-06	0.00038	21.0	3.5	2	23	730	752	729	752	0.94
21	24	1.4e-05	0.00082	19.9	3.3	1	23	757	780	757	780	0.98
22	24	0.00037	0.021	15.5	0.7	2	23	789	811	788	811	0.93
23	24	5.3e-06	0.0003	21.3	0.8	2	23	822	844	822	844	0.94
24	24	1.4e-05	0.00082	19.9	3.3	1	23	849	872	849	872	0.98

Sequence Information

Coding Sequence: ATGGCTGTTTACCAAACACCTTTATGCAGATGTTGTCACAAGAATGGTGTATTCAAGAGTCTATTTATCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGTATCTTATTTGTACCCTCCATAAATGAGAATATCTATACAATATGCGACGAGTGTATTGAAATATTACATATGTCAACGGAACTCAAGAATTGTGTGTTCGCCTGGGCAGTGACCCCAGATGTGAAACAAAATACCTCCGAAGATGAAGACAGTGACACGGATATGATAAATAAGGTTTTAGAGGACGAGTCAAATGAAGAGGTGAAAGTGGAAGAGAGCGGAGACAAATCGGACGAAACCTTCAGCGAATGTGAAGAATTTACAGTCAAAATCGAAGTTAAAGACGAGAGAGTCGATGATGAAGACTCTTGTATAGATAAAGTGTCAGACGAAGATGTCACAAGAACACACATTGAATCTGGTGTCAATTTAAGAAACACAAGCGACAAACATGTGAATAAATGCAATATTTGCAATAAAACTTTTGAACGCAAAGGGAATCTAGTAAATCATCTCAGAACTCACGAGGGCTTGAAATGCCAAATATGTCCAGATATCTTGTCGAATCAGATAGAGTACGATAAACACATGGAAATACACCCGGGCGGAATAATACACGAGTGCAAAGAGTGCGGTCGGACATTCGCAACCAAGGCAAACTTGCTGAGACACTGTCAAACCGTGCACATGGGTGTAAAAAAGTATAGTTGCCAGTATTGCGATAAAAGAATGACGACGAAAGCTAATTTGGTTGTACACGAAAGGAAACACACGAGTGTAAAACCGTATGTGTGCAAAAAATGCAATAAAGCGTTTAATAGTGAAGGGGCCTTACACAAACATAATGCAGTGCATTTGGCACATAGGCCTCACATTTGTAAAGTGTGTGATTATAGATTCAAAACAAAATACCATTGCCAAAGACATATGTTGACGCATACAGGGATCAAATGTTTCCAATGCAGTGTTTGTAGCAAGACTTTTGGACAAAAACATCTTCTCAGTAGCCACATGGCGGTCCATAATGACGAAAGACCCTACGAGTGCAAAATTTGTAAAAAGTTTTTTAATTCCGAGATGCACTTACGCGACCACATGTCGTCTGTACATTTTGCCTTTAAGCCACCACCCATTGAGTGCAATATTTGCAAAATGACTTTTAAATCCAGGCACCATATACGCAGGCACACGTTGGCTGTACATTTGGGCTTAACAATTGAGTGCGACATTTGTAAAAAGATATTTAAATCCAAGGCGAATATACGCCGGCACATGTCGACTGTACATTTGGGCTTTACATTTGAGTGCGACATCTGTAAAAAGACATTTAAATCCAAGGCAAATATACGCCAGCACATGTCGAATGTACATTTGGGCTGTACATTTGAGTGCGACATCTGTAAAAATACATTTAAATCCAAGGCGACAATACGCCAGCACATGTGGAATATACATTTGGGCTGTACATTTGAGTGCGACATCTGTAAGAAGACTTATAAATCCAATTATTATATGCGCCAGCACATGTCGGCTGTACATTTGGGTTTGGGCTTTAAGAAAACACCCGCTCAGTGTGAAATTTGCAAGAAGACATTTAAACAGAAAGGGACTTTACGCGATCACATGTCGGCTGTACATTTGGGCTTTAGATTTGAGTGCCACATTTGTAAGAAAACATTTAAATACAAGAATAATATACACAAACACATTTCGGCTGTACATTTGCGCTTTAACCCAACACCCATTGAGTGCGTCATTTGCAAAAAGACTTATAAATCCAAGCAGTATATGCTCCAGCACATGTCGGCTGTACATTTGGGCTTTAAACCATCCATTGAGTGCGATATTTGCAAAAAGACTTTTAAATCCAAGGCGAATATACGCAAGCACATGTTGGCTGTACATTTGGCCTTTAAGCCATCCATTGAGTGCGATATTTGCAAAAAGACTTTTAAATCCAAGGCGAATATACGTAAGCACATGTTGGCTGTACATTTGGCCTTTAAGCCATCCATTGAATGCGATATTTGCAAAAAGACTTTTAAATCAAAGTTCAATATACGCAGGCACATGTTGGCTGTACATTTGGGTTTGGCCCTTAAGCCAACACCCACTCAGTGTGAAATTTGCAAGAAGACATTTAAACACAAACAGACTTTACGCCGTCACATGTCGGCTGTACATTTGGGCTTTACATTTGAGTGCCACATTTGTAAGATGACATTTAAATACAAGGGTAATATACGCAAGCACATGTCGACTGTACATTTGGGCTTTAAGCAAACACCCACTGAGTGCGTCATTTGCAAAAAGACTTATAAATCCAATTATTATATGCGCCAGCACATGTCGGCTGTACATTTGGGTTTGGGCTTTAAGAAAACACCCGCTCAGTGTGAAATTTGCAAGAAGACATTTAAACAGAAAGGGACTTTACGCGATCACATGTCGGCTGTACATTTGGGCTTTAAATTTGAGTGCCACATTTGTAAGATGACATTTAAATACAAGGGTAATATACGCAAGCACATGTCGACTGTACATTTGGGCTTTAAGTAA
Protein Sequence: MAVYQTPLCRCCHKNGVFKSLFIDYIYNENEVENYSQMLHATFGILFVPSINENIYTICDECIEILHMSTELKNCVFAWAVTPDVKQNTSEDEDSDTDMINKVLEDESNEEVKVEESGDKSDETFSECEEFTVKIEVKDERVDDEDSCIDKVSDEDVTRTHIESGVNLRNTSDKHVNKCNICNKTFERKGNLVNHLRTHEGLKCQICPDILSNQIEYDKHMEIHPGGIIHECKECGRTFATKANLLRHCQTVHMGVKKYSCQYCDKRMTTKANLVVHERKHTSVKPYVCKKCNKAFNSEGALHKHNAVHLAHRPHICKVCDYRFKTKYHCQRHMLTHTGIKCFQCSVCSKTFGQKHLLSSHMAVHNDERPYECKICKKFFNSEMHLRDHMSSVHFAFKPPPIECNICKMTFKSRHHIRRHTLAVHLGLTIECDICKKIFKSKANIRRHMSTVHLGFTFECDICKKTFKSKANIRQHMSNVHLGCTFECDICKNTFKSKATIRQHMWNIHLGCTFECDICKKTYKSNYYMRQHMSAVHLGLGFKKTPAQCEICKKTFKQKGTLRDHMSAVHLGFRFECHICKKTFKYKNNIHKHISAVHLRFNPTPIECVICKKTYKSKQYMLQHMSAVHLGFKPSIECDICKKTFKSKANIRKHMLAVHLAFKPSIECDICKKTFKSKANIRKHMLAVHLAFKPSIECDICKKTFKSKFNIRRHMLAVHLGLALKPTPTQCEICKKTFKHKQTLRRHMSAVHLGFTFECHICKMTFKYKGNIRKHMSTVHLGFKQTPTECVICKKTYKSNYYMRQHMSAVHLGLGFKKTPAQCEICKKTFKQKGTLRDHMSAVHLGFKFECHICKMTFKYKGNIRKHMSTVHLGFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387288;
90% Identity: iTF_01387288;
80% Identity: iTF_01387288;