Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000065.1:1466543-1468198[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0029 8.7 6.8 0.2 21 50 86 116 81 121 0.83

2 13 0.12 3.7e+02 1.6 1.7 26 48 122 144 117 150 0.87

3 13 0.43 1.3e+03 -0.2 0.1 27 48 152 170 146 174 0.71

4 13 0.0061 18 5.8 0.3 27 49 180 202 177 205 0.93

5 13 0.0043 13 6.2 0.1 23 49 207 233 203 236 0.88

6 13 0.01 30 5.0 0.0 23 49 238 264 233 269 0.86

7 13 0.0003 0.9 9.9 0.0 24 50 269 295 265 297 0.94

8 13 2.7 8.1e+03 -2.7 0.1 27 48 303 324 302 326 0.78

9 13 0.00043 1.3 9.4 0.0 24 50 362 388 358 391 0.92

10 13 0.51 1.5e+03 -0.4 0.0 24 52 393 421 389 423 0.85

11 13 0.63 1.9e+03 -0.7 0.1 26 47 424 445 416 450 0.83

12 13 0.0035 10 6.5 0.4 18 45 446 474 428 480 0.78

13 13 6.9e-05 0.21 12.0 0.1 24 49 514 539 511 542 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0029	8.7	6.8	0.2	21	50	86	116	81	121	0.83
2	13	0.12	3.7e+02	1.6	1.7	26	48	122	144	117	150	0.87
3	13	0.43	1.3e+03	-0.2	0.1	27	48	152	170	146	174	0.71
4	13	0.0061	18	5.8	0.3	27	49	180	202	177	205	0.93
5	13	0.0043	13	6.2	0.1	23	49	207	233	203	236	0.88
6	13	0.01	30	5.0	0.0	23	49	238	264	233	269	0.86
7	13	0.0003	0.9	9.9	0.0	24	50	269	295	265	297	0.94
8	13	2.7	8.1e+03	-2.7	0.1	27	48	303	324	302	326	0.78
9	13	0.00043	1.3	9.4	0.0	24	50	362	388	358	391	0.92
10	13	0.51	1.5e+03	-0.4	0.0	24	52	393	421	389	423	0.85
11	13	0.63	1.9e+03	-0.7	0.1	26	47	424	445	416	450	0.83
12	13	0.0035	10	6.5	0.4	18	45	446	474	428	480	0.78
13	13	6.9e-05	0.21	12.0	0.1	24	49	514	539	511	542	0.92

Sequence Information

Coding Sequence: ATGCACACTAGTGTAAAACCTGAGTATGAGTGTGAAAAATGCAATAAATCGTTTAAAAGCAAAGATGCTTTGATAAGTCATAAAAAAGTGCACGAGAAACGTGAGCCTCACAATTCAAAGTGTGAAAATAGTTTAAAAAGAAGTGAAAATTTCAATAAACAAATGTCGAAGCACGCTGAGATAAATGAATGTGAAATTTGTAAAAAGACATATAAACGTAAACAGACTTTAATGAATCACATTTCGGATGTACATTCGGGTCAGCCACCGAGTCAGTGCCAAATTTGCAAAAAGACATTTAAATCCAAGAGATATATACTTAGACACATGCAGTCTGTTCATTGGGGCCAAAAGCCACTCAGTCAGTGCAAAATTTGCAAGAGAATATTTAAACACAAACACCATTTAAGCCGCCACATTTCGGCCTTACATTTGAGGCTTAAGTCAACTAAGTGTGAAATTTGCAACAAAACATTTAAAAATTTACGCACACACATGAGATCTGTACATTTGAGCTTTAAGCGACTGATCCCCAAGTGCGACATATGTAAGAAAACATTTAAATTCATGAGATATTTACGCAAACACGTGAGGGCTGTACATTTCGGCTTTAAGCAAACGCCCGCTGAGTGCGACATATGTAAGAAGACATTTACATCCAGACAGAACATACGCCTGCACATGATGGCTGTACATTTGAGTTCTGACTTAAAGCCATTTGAATGCGACATTTGTAAGGCGACATTTAAAATCAAGCGGAGTATACAAGACCACATGTTGATTGTACATTTGGGTCTTAAGCCACCAAGTCAATGTGAAATTTGCAAAAAGACATTTAAATTCAAGCAGAATATGCTCCAGCACATGTCGCTTGTACATTTTGCCTCTGAATTAACGCGCTTTGAATGCGACATATGCAAGAAAACATTTAAATCCAAGTCTCGTATACGCTTCCACATGTCGGCTATACATTTGAGATCTGAGTTAGGGTCTTATAAATGCGAAATTTGCGAAAAGACATTTCATTACAAAGATAGTGTAAAAAAGCACATGTCGCGTGTACATTTGGGCGTCAAGCCAATGCCCGCAGATTGCAACATATGTAAGAAAATATTTAAATCCAAGACTTCTGCACGCAGACACATGTCGGATGTACATTTTGGCTCTGGCTTAACGCCATTTGAATGTGAAATTTGCAAGAAGAAGTTTAAATATAAACAGAGTTTAAACAATCACATGTTGGCTCAACATTCTGGCAGGCCACTCTTTCAATGTGAAATTTGCAACAAGTCATTTAAACACTTTAATAGTGTACGCAAACATATGAGGTCTGTACATTCGGGCTCTAATCAAACGCCCGCCGAATGCAACATATGCAAGAAAACATTTAAACACAACAAGTATATACCTAGACACATGATGTCTTTTCATTCGGGCGTTAGGCCAACGCACTATGAGTGCGACATATGCAAGAAAACATTTAAATACAAGTCTTATATATACAATCACATGATTGTTGCACATTTGGGCCTTAAGCCACCAAGTCAATGTGAAATTTGCAAGAAGACGTTTAAATACGCGCACAATCTACGCAAACACTTGTCTGTTGTACATTTAGGCTTGAAACGAACACATACTAAAAAAAAAGTTGATTAA
Protein Sequence: MHTSVKPEYECEKCNKSFKSKDALISHKKVHEKREPHNSKCENSLKRSENFNKQMSKHAEINECEICKKTYKRKQTLMNHISDVHSGQPPSQCQICKKTFKSKRYILRHMQSVHWGQKPLSQCKICKRIFKHKHHLSRHISALHLRLKSTKCEICNKTFKNLRTHMRSVHLSFKRLIPKCDICKKTFKFMRYLRKHVRAVHFGFKQTPAECDICKKTFTSRQNIRLHMMAVHLSSDLKPFECDICKATFKIKRSIQDHMLIVHLGLKPPSQCEICKKTFKFKQNMLQHMSLVHFASELTRFECDICKKTFKSKSRIRFHMSAIHLRSELGSYKCEICEKTFHYKDSVKKHMSRVHLGVKPMPADCNICKKIFKSKTSARRHMSDVHFGSGLTPFECEICKKKFKYKQSLNNHMLAQHSGRPLFQCEICNKSFKHFNSVRKHMRSVHSGSNQTPAECNICKKTFKHNKYIPRHMMSFHSGVRPTHYECDICKKTFKYKSYIYNHMIVAHLGLKPPSQCEICKKTFKYAHNLRKHLSVVHLGLKRTHTKKKVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386914;
90% Identity: iTF_01386914;
80% Identity: iTF_01386914;