Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000065.1:1466543-1468198[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.71 5e+02 1.1 1.7 18 29 10 21 7 41 0.80

2 18 6 4.2e+03 -1.9 0.1 21 32 40 52 39 59 0.69

3 18 0.0001 0.073 13.3 2.9 15 44 60 86 50 86 0.86

4 18 0.014 9.5 6.6 1.3 18 43 92 114 91 115 0.87

5 18 0.9 6.3e+02 0.7 6.3 18 40 122 141 120 145 0.83

6 18 0.0013 0.94 9.8 6.0 5 43 138 170 136 171 0.92

7 18 0.23 1.6e+02 2.6 1.2 18 42 179 200 172 202 0.73

8 18 0.0016 1.1 9.6 1.3 11 36 201 225 191 235 0.72

9 18 0.099 70 3.8 0.3 17 32 240 255 231 265 0.77

10 18 0.011 7.7 6.9 0.9 18 43 271 293 270 294 0.89

11 18 0.011 7.8 6.8 1.4 13 35 297 316 290 327 0.75

12 18 0.02 14 6.0 3.6 15 43 330 355 319 356 0.81

13 18 0.00016 0.11 12.7 0.1 17 43 363 386 358 387 0.89

14 18 0.0029 2 8.7 0.3 18 43 395 417 391 418 0.71

15 18 0.033 23 5.3 1.7 18 44 424 447 422 447 0.89

16 18 0.0039 2.8 8.3 1.0 15 43 452 477 449 478 0.72

17 18 0.017 12 6.3 0.5 17 30 485 498 480 509 0.76

18 18 0.00075 0.53 10.6 3.2 18 43 516 538 515 546 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.71	5e+02	1.1	1.7	18	29	10	21	7	41	0.80
2	18	6	4.2e+03	-1.9	0.1	21	32	40	52	39	59	0.69
3	18	0.0001	0.073	13.3	2.9	15	44	60	86	50	86	0.86
4	18	0.014	9.5	6.6	1.3	18	43	92	114	91	115	0.87
5	18	0.9	6.3e+02	0.7	6.3	18	40	122	141	120	145	0.83
6	18	0.0013	0.94	9.8	6.0	5	43	138	170	136	171	0.92
7	18	0.23	1.6e+02	2.6	1.2	18	42	179	200	172	202	0.73
8	18	0.0016	1.1	9.6	1.3	11	36	201	225	191	235	0.72
9	18	0.099	70	3.8	0.3	17	32	240	255	231	265	0.77
10	18	0.011	7.7	6.9	0.9	18	43	271	293	270	294	0.89
11	18	0.011	7.8	6.8	1.4	13	35	297	316	290	327	0.75
12	18	0.02	14	6.0	3.6	15	43	330	355	319	356	0.81
13	18	0.00016	0.11	12.7	0.1	17	43	363	386	358	387	0.89
14	18	0.0029	2	8.7	0.3	18	43	395	417	391	418	0.71
15	18	0.033	23	5.3	1.7	18	44	424	447	422	447	0.89
16	18	0.0039	2.8	8.3	1.0	15	43	452	477	449	478	0.72
17	18	0.017	12	6.3	0.5	17	30	485	498	480	509	0.76
18	18	0.00075	0.53	10.6	3.2	18	43	516	538	515	546	0.80

Sequence Information

Coding Sequence: ATGCACACTAGTGTAAAACCTGAGTATGAGTGTGAAAAATGCAATAAATCGTTTAAAAGCAAAGATGCTTTGATAAGTCATAAAAAAGTGCACGAGAAACGTGAGCCTCACAATTCAAAGTGTGAAAATAGTTTAAAAAGAAGTGAAAATTTCAATAAACAAATGTCGAAGCACGCTGAGATAAATGAATGTGAAATTTGTAAAAAGACATATAAACGTAAACAGACTTTAATGAATCACATTTCGGATGTACATTCGGGTCAGCCACCGAGTCAGTGCCAAATTTGCAAAAAGACATTTAAATCCAAGAGATATATACTTAGACACATGCAGTCTGTTCATTGGGGCCAAAAGCCACTCAGTCAGTGCAAAATTTGCAAGAGAATATTTAAACACAAACACCATTTAAGCCGCCACATTTCGGCCTTACATTTGAGGCTTAAGTCAACTAAGTGTGAAATTTGCAACAAAACATTTAAAAATTTACGCACACACATGAGATCTGTACATTTGAGCTTTAAGCGACTGATCCCCAAGTGCGACATATGTAAGAAAACATTTAAATTCATGAGATATTTACGCAAACACGTGAGGGCTGTACATTTCGGCTTTAAGCAAACGCCCGCTGAGTGCGACATATGTAAGAAGACATTTACATCCAGACAGAACATACGCCTGCACATGATGGCTGTACATTTGAGTTCTGACTTAAAGCCATTTGAATGCGACATTTGTAAGGCGACATTTAAAATCAAGCGGAGTATACAAGACCACATGTTGATTGTACATTTGGGTCTTAAGCCACCAAGTCAATGTGAAATTTGCAAAAAGACATTTAAATTCAAGCAGAATATGCTCCAGCACATGTCGCTTGTACATTTTGCCTCTGAATTAACGCGCTTTGAATGCGACATATGCAAGAAAACATTTAAATCCAAGTCTCGTATACGCTTCCACATGTCGGCTATACATTTGAGATCTGAGTTAGGGTCTTATAAATGCGAAATTTGCGAAAAGACATTTCATTACAAAGATAGTGTAAAAAAGCACATGTCGCGTGTACATTTGGGCGTCAAGCCAATGCCCGCAGATTGCAACATATGTAAGAAAATATTTAAATCCAAGACTTCTGCACGCAGACACATGTCGGATGTACATTTTGGCTCTGGCTTAACGCCATTTGAATGTGAAATTTGCAAGAAGAAGTTTAAATATAAACAGAGTTTAAACAATCACATGTTGGCTCAACATTCTGGCAGGCCACTCTTTCAATGTGAAATTTGCAACAAGTCATTTAAACACTTTAATAGTGTACGCAAACATATGAGGTCTGTACATTCGGGCTCTAATCAAACGCCCGCCGAATGCAACATATGCAAGAAAACATTTAAACACAACAAGTATATACCTAGACACATGATGTCTTTTCATTCGGGCGTTAGGCCAACGCACTATGAGTGCGACATATGCAAGAAAACATTTAAATACAAGTCTTATATATACAATCACATGATTGTTGCACATTTGGGCCTTAAGCCACCAAGTCAATGTGAAATTTGCAAGAAGACGTTTAAATACGCGCACAATCTACGCAAACACTTGTCTGTTGTACATTTAGGCTTGAAACGAACACATACTAAAAAAAAAGTTGATTAA
Protein Sequence: MHTSVKPEYECEKCNKSFKSKDALISHKKVHEKREPHNSKCENSLKRSENFNKQMSKHAEINECEICKKTYKRKQTLMNHISDVHSGQPPSQCQICKKTFKSKRYILRHMQSVHWGQKPLSQCKICKRIFKHKHHLSRHISALHLRLKSTKCEICNKTFKNLRTHMRSVHLSFKRLIPKCDICKKTFKFMRYLRKHVRAVHFGFKQTPAECDICKKTFTSRQNIRLHMMAVHLSSDLKPFECDICKATFKIKRSIQDHMLIVHLGLKPPSQCEICKKTFKFKQNMLQHMSLVHFASELTRFECDICKKTFKSKSRIRFHMSAIHLRSELGSYKCEICEKTFHYKDSVKKHMSRVHLGVKPMPADCNICKKIFKSKTSARRHMSDVHFGSGLTPFECEICKKKFKYKQSLNNHMLAQHSGRPLFQCEICNKSFKHFNSVRKHMRSVHSGSNQTPAECNICKKTFKHNKYIPRHMMSFHSGVRPTHYECDICKKTFKYKSYIYNHMIVAHLGLKPPSQCEICKKTFKYAHNLRKHLSVVHLGLKRTHTKKKVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387287; iTF_01386936;
90% Identity: iTF_01387287; iTF_01386936;
80% Identity: iTF_01387287; iTF_01386936;