Sfor010869.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000077.1:577031-579022[+]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0064 1.4e+02 2.5 3.2 11 16 13 18 11 19 0.82 2 4 1 2.1e+04 -5.1 1.4 12 14 33 35 33 35 0.91 3 4 4e-10 8.5e-06 25.5 2.2 4 21 55 72 53 73 0.87 4 4 0.63 1.3e+04 -3.9 6.9 10 15 84 89 83 90 0.83
Sequence Information
- Coding Sequence
- ATGTCTGATGATGGATCAACAGTTGTTGAGAAAAAAGGGCGCGGTAGACCAAAGGCTAATGGAACACAAACGGAAATCAAAGGTGATACAAAGAAAAGAGGCAGGGCCGCTAAACCTGAACCGACTAAAGCTAAGGAATCTGCGAAATCATCTGACGATGAACAAGCGCCAGTAGCGAAAAGAGGTCGCGGTCGACCAAAGGGCTCCAAGAAGAAAGCCGCCCCTAAAGCAAAGAGTGGAGGCGAAGGTCGTGGTCGCGGTAGGCCGCGCAAAGACGCACCGCCCAAGAAGGATGCCGCCTCCACGGAGGAGGAGCAAGAAGATGAGGATGAAGAAGAGGGCTCTGACCAGTAA
- Protein Sequence
- MSDDGSTVVEKKGRGRPKANGTQTEIKGDTKKRGRAAKPEPTKAKESAKSSDDEQAPVAKRGRGRPKGSKKKAAPKAKSGGEGRGRGRPRKDAPPKKDAASTEEEQEDEDEEEGSDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878866;
- 90% Identity
- iTF_01388486; iTF_01387616;
- 80% Identity
- iTF_01387616;