Sand021733.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020002276.1:21559-25495[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0054 21 5.7 0.2 21 50 179 208 164 212 0.89 2 6 0.015 60 4.3 0.1 26 51 213 237 208 241 0.88 3 6 0.021 82 3.8 0.0 26 52 266 292 260 293 0.88 4 6 0.00017 0.67 10.5 0.0 20 49 429 458 426 463 0.91 5 6 0.076 3e+02 2.0 0.2 23 49 465 491 460 495 0.85 6 6 6.5e-05 0.25 11.9 0.1 23 48 496 521 490 524 0.92
Sequence Information
- Coding Sequence
- ATGAATCTAACACCTTTATGTAGATGTTGTCACAAGAACGGTGTTTTTAAGAATCTATTCTATGACTTTATCTACAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACCATACATTCGGAATCTCAGTTGAACCTTTGGAACGTGACAAAATGTGTACAATATGCGATGAGTGTATTGAAACACTACGTTTCTCTATGGAATTCAAGAACGGCATCCTTGCATGTGGAAAAAATGTTAAACAGGAACCATTAATTGAAAACGATGTCACAATTGAAATAGAAGACATGTGGAGTTATGGGCGTAGCGAAAAAGGTGACACTCTTCAAGTGGAGGATGGGGATGAGGATGGCAGAGGGCGTCCAAGGAAGCAAACGTCGGACAAGTGTCGACCCAAACATCGCCACGGAAACAAACTTCGACAGCTCAACCGGAAAAGTGTCGATCTCGTACCCGACAACGAATGCAATATTTGCAATATTTGCAATAAAACATTTAAACACAAAGGCCACTTGGAGAATCACATGAAAACTCACCAAGGCCACAAATGCCCAATATGTCCACAAACATTTTCCAATCAACAAGAACGGAAGGAACACGTAAACTCTAAGCACTTTGTCGACAACAAATATTGCTGTACCGTTTGCGATGCGACTTTCGCCGAAGTGAAAGAGATAAAGCGTCACATAAAAACGCACTTTGCACATCGTTGCCAAGTGTGCAATAAGGATTACAAGAGCAAGAGTGAATTGCACAGACACGAAATTGCGCACAACGACCGAAAAAAGTTCAAGTGCTCCGTATGTAAAAGTCTTTTCACTCAAAATCACTCGTTAAAGGTTCACATGGAAACACACGGAGCGGGAAAACCGCACGAGTGCTTACAGTGCGGTAGAAAATTCACAGTGAAAAGATACTTGGCGGCGCATGTTCAAAACGTTCACGCGAATAAAAAAAAGTACAATTGCCAATATTGCAATAAAGGTTTTACGAGGAGAGACAAGCTGGTGACTCACGAAATGGCACACGCAAGTGTCAAACCGTACGAGTGTGAAAAATGTAAAAAAACATTTATAAGTAAAGCCTCTTTGATTGGTCACAACGAAGTGCACGAAACAATTAAGAGTTACGAATGTAAAATATGCGAAAAGGCGTACAAAAGAAAATCAACATTTAAAATGCACATGTTAACGCACAAAGGGATAAAACCGTTTAAATGCAACGTCTGCACTAAAAGTTTTCTACGTAAAGACTGTTTCAACGGTCACATGAACGTTCATAAAAGTGAAAAACCATTTAATTGTGATATTTGCAAGAATAATTTCAAATCAAAAGCGAATATACGTGAGCACATGAAGGCTGTGCATTTGGTATTGAGGCCGAGTAGTGCACATGCACAATGCGATATTTGCAAGAGAACGTTGAAATCAAAGGCGATCGTACGTCAGCACATAATGGTTGTACACTTGGGCTTAAAATCGACGCCAAGTGAGTGCGAAATTTGCAAGAAAATACTTAAATCAAAGGCGAATATGCGCAAGCACATGTCACTTGTGCACAATAAAGAGAAACTTATTTAA
- Protein Sequence
- MNLTPLCRCCHKNGVFKNLFYDFIYNENEIENYSQMLYHTFGISVEPLERDKMCTICDECIETLRFSMEFKNGILACGKNVKQEPLIENDVTIEIEDMWSYGRSEKGDTLQVEDGDEDGRGRPRKQTSDKCRPKHRHGNKLRQLNRKSVDLVPDNECNICNICNKTFKHKGHLENHMKTHQGHKCPICPQTFSNQQERKEHVNSKHFVDNKYCCTVCDATFAEVKEIKRHIKTHFAHRCQVCNKDYKSKSELHRHEIAHNDRKKFKCSVCKSLFTQNHSLKVHMETHGAGKPHECLQCGRKFTVKRYLAAHVQNVHANKKKYNCQYCNKGFTRRDKLVTHEMAHASVKPYECEKCKKTFISKASLIGHNEVHETIKSYECKICEKAYKRKSTFKMHMLTHKGIKPFKCNVCTKSFLRKDCFNGHMNVHKSEKPFNCDICKNNFKSKANIREHMKAVHLVLRPSSAHAQCDICKRTLKSKAIVRQHIMVVHLGLKSTPSECEICKKILKSKANMRKHMSLVHNKEKLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386052;
- 90% Identity
- iTF_01386052;
- 80% Identity
- iTF_01386052;