Basic Information

Insect: Synanthedon andrenaeformis
Gene Symbol: -
Assembly: GCA_936447275.2
Location: CAKZFQ020002276.1:21559-25495[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.7e-07 2.9e-05 24.6 5.4 3 23 160 180 158 180 0.97

2 13 0.00012 0.0075 17.1 1.8 1 23 183 206 183 206 0.96

3 13 0.00074 0.046 14.6 1.1 1 23 212 234 212 234 0.98

4 13 0.00031 0.019 15.8 3.6 1 23 237 259 237 259 0.94

5 13 0.00019 0.012 16.4 3.4 1 23 265 287 265 287 0.99

6 13 0.00027 0.017 16.0 0.8 1 23 293 316 293 316 0.95

7 13 2.7e-05 0.0017 19.1 1.1 1 23 322 344 322 344 0.96

8 13 8.4e-05 0.0052 17.5 0.3 1 23 350 372 350 372 0.95

9 13 7.1e-07 4.4e-05 24.1 2.3 1 23 378 400 378 400 0.99

10 13 0.0012 0.074 13.9 4.0 1 23 406 428 406 428 0.98

11 13 0.00032 0.02 15.7 0.6 1 23 434 457 434 457 0.95

12 13 0.072 4.5 8.3 0.2 2 23 468 490 468 490 0.95

13 13 0.00017 0.01 16.6 0.5 2 23 499 521 498 521 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.7e-07	2.9e-05	24.6	5.4	3	23	160	180	158	180	0.97
2	13	0.00012	0.0075	17.1	1.8	1	23	183	206	183	206	0.96
3	13	0.00074	0.046	14.6	1.1	1	23	212	234	212	234	0.98
4	13	0.00031	0.019	15.8	3.6	1	23	237	259	237	259	0.94
5	13	0.00019	0.012	16.4	3.4	1	23	265	287	265	287	0.99
6	13	0.00027	0.017	16.0	0.8	1	23	293	316	293	316	0.95
7	13	2.7e-05	0.0017	19.1	1.1	1	23	322	344	322	344	0.96
8	13	8.4e-05	0.0052	17.5	0.3	1	23	350	372	350	372	0.95
9	13	7.1e-07	4.4e-05	24.1	2.3	1	23	378	400	378	400	0.99
10	13	0.0012	0.074	13.9	4.0	1	23	406	428	406	428	0.98
11	13	0.00032	0.02	15.7	0.6	1	23	434	457	434	457	0.95
12	13	0.072	4.5	8.3	0.2	2	23	468	490	468	490	0.95
13	13	0.00017	0.01	16.6	0.5	2	23	499	521	498	521	0.94

Sequence Information

Coding Sequence: ATGAATCTAACACCTTTATGTAGATGTTGTCACAAGAACGGTGTTTTTAAGAATCTATTCTATGACTTTATCTACAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACCATACATTCGGAATCTCAGTTGAACCTTTGGAACGTGACAAAATGTGTACAATATGCGATGAGTGTATTGAAACACTACGTTTCTCTATGGAATTCAAGAACGGCATCCTTGCATGTGGAAAAAATGTTAAACAGGAACCATTAATTGAAAACGATGTCACAATTGAAATAGAAGACATGTGGAGTTATGGGCGTAGCGAAAAAGGTGACACTCTTCAAGTGGAGGATGGGGATGAGGATGGCAGAGGGCGTCCAAGGAAGCAAACGTCGGACAAGTGTCGACCCAAACATCGCCACGGAAACAAACTTCGACAGCTCAACCGGAAAAGTGTCGATCTCGTACCCGACAACGAATGCAATATTTGCAATATTTGCAATAAAACATTTAAACACAAAGGCCACTTGGAGAATCACATGAAAACTCACCAAGGCCACAAATGCCCAATATGTCCACAAACATTTTCCAATCAACAAGAACGGAAGGAACACGTAAACTCTAAGCACTTTGTCGACAACAAATATTGCTGTACCGTTTGCGATGCGACTTTCGCCGAAGTGAAAGAGATAAAGCGTCACATAAAAACGCACTTTGCACATCGTTGCCAAGTGTGCAATAAGGATTACAAGAGCAAGAGTGAATTGCACAGACACGAAATTGCGCACAACGACCGAAAAAAGTTCAAGTGCTCCGTATGTAAAAGTCTTTTCACTCAAAATCACTCGTTAAAGGTTCACATGGAAACACACGGAGCGGGAAAACCGCACGAGTGCTTACAGTGCGGTAGAAAATTCACAGTGAAAAGATACTTGGCGGCGCATGTTCAAAACGTTCACGCGAATAAAAAAAAGTACAATTGCCAATATTGCAATAAAGGTTTTACGAGGAGAGACAAGCTGGTGACTCACGAAATGGCACACGCAAGTGTCAAACCGTACGAGTGTGAAAAATGTAAAAAAACATTTATAAGTAAAGCCTCTTTGATTGGTCACAACGAAGTGCACGAAACAATTAAGAGTTACGAATGTAAAATATGCGAAAAGGCGTACAAAAGAAAATCAACATTTAAAATGCACATGTTAACGCACAAAGGGATAAAACCGTTTAAATGCAACGTCTGCACTAAAAGTTTTCTACGTAAAGACTGTTTCAACGGTCACATGAACGTTCATAAAAGTGAAAAACCATTTAATTGTGATATTTGCAAGAATAATTTCAAATCAAAAGCGAATATACGTGAGCACATGAAGGCTGTGCATTTGGTATTGAGGCCGAGTAGTGCACATGCACAATGCGATATTTGCAAGAGAACGTTGAAATCAAAGGCGATCGTACGTCAGCACATAATGGTTGTACACTTGGGCTTAAAATCGACGCCAAGTGAGTGCGAAATTTGCAAGAAAATACTTAAATCAAAGGCGAATATGCGCAAGCACATGTCACTTGTGCACAATAAAGAGAAACTTATTTAA
Protein Sequence: MNLTPLCRCCHKNGVFKNLFYDFIYNENEIENYSQMLYHTFGISVEPLERDKMCTICDECIETLRFSMEFKNGILACGKNVKQEPLIENDVTIEIEDMWSYGRSEKGDTLQVEDGDEDGRGRPRKQTSDKCRPKHRHGNKLRQLNRKSVDLVPDNECNICNICNKTFKHKGHLENHMKTHQGHKCPICPQTFSNQQERKEHVNSKHFVDNKYCCTVCDATFAEVKEIKRHIKTHFAHRCQVCNKDYKSKSELHRHEIAHNDRKKFKCSVCKSLFTQNHSLKVHMETHGAGKPHECLQCGRKFTVKRYLAAHVQNVHANKKKYNCQYCNKGFTRRDKLVTHEMAHASVKPYECEKCKKTFISKASLIGHNEVHETIKSYECKICEKAYKRKSTFKMHMLTHKGIKPFKCNVCTKSFLRKDCFNGHMNVHKSEKPFNCDICKNNFKSKANIREHMKAVHLVLRPSSAHAQCDICKRTLKSKAIVRQHIMVVHLGLKSTPSECEICKKILKSKANMRKHMSLVHNKEKLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386385;
90% Identity: iTF_01386385;
80% Identity: iTF_01386385;