Sand004364.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synanthedon andrenaeformis
Gene Symbol
-
Assembly
GCA_936447275.2
Location
CAKZFQ020000232.1:193018-199875[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.84 3.3e+03 -1.3 0.2 25 45 203 223 195 241 0.84
2 16 1.5 5.9e+03 -2.1 0.0 25 49 397 421 392 426 0.74
3 16 0.028 1.1e+02 3.4 0.0 24 48 427 451 423 454 0.89
4 16 0.0027 10 6.7 0.1 27 49 458 480 452 485 0.89
5 16 0.21 8.1e+02 0.6 0.0 24 45 486 507 482 514 0.86
6 16 0.0023 8.9 6.9 0.1 26 49 516 539 506 544 0.88
7 16 0.22 8.6e+02 0.5 0.0 24 44 545 565 542 572 0.86
8 16 0.0025 9.6 6.8 0.1 26 49 575 598 569 604 0.88
9 16 0.21 8.3e+02 0.6 0.0 24 44 604 624 600 631 0.86
10 16 0.0023 9 6.9 0.1 26 49 634 657 624 662 0.88
11 16 0.2 8e+02 0.6 0.0 24 45 663 684 659 692 0.87
12 16 0.0025 10 6.7 0.1 26 49 693 716 687 721 0.88
13 16 0.21 8.1e+02 0.6 0.0 24 45 722 743 718 750 0.86
14 16 0.0025 9.7 6.8 0.1 26 49 752 775 745 780 0.88
15 16 0.22 8.6e+02 0.6 0.0 24 44 781 801 777 807 0.86
16 16 0.11 4.3e+02 1.5 0.0 26 48 811 833 801 837 0.88

Sequence Information

Coding Sequence
ATGGCTGAAACATTGAACCCAATATCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTCTATTTTCCAACTTCATTTACGAGAATGAAATTGAGAATTATTCGCAGATGTTGTACGATACATTCGGAATCTTATTTGTACCCTCGATAGATGACGAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATCTCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCTGCGCTCCACTTGACGGGGGCACTGCAGTGACCCCAGATGTGAAACAAAAGACCTCCGAAGATGAAGTCAGTGACACGGATATGATAAATAAGGCATTAGAGGAAGAGTTAAATGAAGAGGTGAAAGTGGAAGAGAGCGGAGACAAATCGGACGAAACTTTCAGCGAATGTGAAGAATTTACAATCGACATCGATGTTAAGACAGAAGAGAGTGTCGAAGATAAAGACTCTTGTACAGACAAAGTGTTAGACAAAGATGTCACAATTGAAGAGAGCAGAAAAGAATCGTCGAGTGAATCGGGTGTCAATTTAAGAAACACAAGCGACAAACATGAGAATAAATGCAATATTTGCAATAAAACTTTTGAATGCAAAGGGAACCTAGAAAATCATCTTAGAAGTCACGAGGGATATAAATGCCAAATATGTCCAGAAATATTGTCGAATCAGATAGAGTACGATGAACACATAGAAATACACCTGGGTGGAATAATAATCGAGTGCAAAGAGTGCAGTCGAACATTCGCAACCAATGGAAACTTGCTGAGGCATTATCAAAACGTGCACATGGGTATGAAAAATTATAGTTGCCAGTATTGCGATAAAAGAATGTCGACGAGAGAGCATTTGGTCCAACACGAAAGGATACACACGGGTGTAAAACCGTATGTGTGCAAAAAATGCAATAAAGCGTTTAGTACAAAAGGGCACTTACATCGACATAATGCAGTGCATTCGGCACTTAAGCCTTACATTTGTAACGTGTGTGATATAAGATTCAAAAGTAAAATCGGTTACCGAGGGCACATGCTGAAGCATACAGGGATAAAACGTTTCCAATGCGGTGTCTGTAGCAAGACTTTTATGTTTAAATATAATCTCAATAGCCACATGGCGGTCCATAATCGCGAAAGATCCTACGAGTGCAACATTTGTAAAAAAAATTATAAATCGAAGAACATCTTACACAAGCATATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGATATTTGCAAAAAGATTTTTAAATCCAAGGTGACTTTACGCCAGCACAAGAAGGTTGTACATTCGGGATTTACATTTGAGTGCGACATTTGTAAGAAGACATTTAAATATAAGGCGAATATACGCCGCCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGACATTTGCAAAAAGACTTTTAAATCCAAGGTGACTTTACGCCAGCACAAGACGGCTGTACATTCGGGCTTTACATTTGAGTGCGACATTTGTAAGAAGACATTTAAATATAAGGCGAATATACGCCGCCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGACATTTGCAAAAAGACTTTTAAATCCAAGGTGACTTTACGCCAGCACAAGACGGCTGTACATTCGGGCTTTACATTTGAGTGCGACATTTGTAAGAAGACATTTAAATATAAGGCGAATATACGCCGCCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGACATTTGCAAAAAGACTTTTAAATCCAAGGTGACTTTACGCCAGCACAAGACGGCTGTACATTCGGGCTTTACATTTGAGTGCGACATTTGTAAGAAGACATTTAAATATAAGGCGAATATACGCCGCCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGACATTTGCAAAAAGACTTTTAAATCCAAGGTGACTTTACGCCAGCACAAGACGGCTGTACATTCGGGCTTTACATTTGAGTGCGACATTTGTAAGAAGACATTTAAATATAAGGCGAATATACGCCGCCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGACATTTGCAAAAAGACTTTTAAATCCAAGGTGACTTTACGCCAGCACAAGACGGCTGTACATTCGGGCTTTACATTTGAGTGCGACATTTGTAAGAAGACATTTAAATATAAGGCGAATATACGCCGCCACATGTCGGTTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGACATTTGCAAAAAGACTTTTAAATCCAAGGTGACTTTACGCCAGCACAAGACGGCTGTACATTCGGGCTTTACATTTGAGTGCGACATTTGTAAGAAGACATTTAAATCTAAGGCGAATATATACCGCCACATGTCGGCTGTACATTTGGGCTTTAAGGTGGTACCTTGCGCTCCGAACAAACTGCAGCGCGGATAG
Protein Sequence
MAETLNPISFCRCCHKNGDFKCLFSNFIYENEIENYSQMLYDTFGILFVPSIDDEIYTICDECIEKLRISTEFKNCVLACKKNACWRGHCCAPLDGGTAVTPDVKQKTSEDEVSDTDMINKALEEELNEEVKVEESGDKSDETFSECEEFTIDIDVKTEESVEDKDSCTDKVLDKDVTIEESRKESSSESGVNLRNTSDKHENKCNICNKTFECKGNLENHLRSHEGYKCQICPEILSNQIEYDEHIEIHLGGIIIECKECSRTFATNGNLLRHYQNVHMGMKNYSCQYCDKRMSTREHLVQHERIHTGVKPYVCKKCNKAFSTKGHLHRHNAVHSALKPYICNVCDIRFKSKIGYRGHMLKHTGIKRFQCGVCSKTFMFKYNLNSHMAVHNRERSYECNICKKNYKSKNILHKHMSAVHLGFKPTPTECDICKKIFKSKVTLRQHKKVVHSGFTFECDICKKTFKYKANIRRHMSVVHLGFKPTPTECDICKKTFKSKVTLRQHKTAVHSGFTFECDICKKTFKYKANIRRHMSVVHLGFKPTPTECDICKKTFKSKVTLRQHKTAVHSGFTFECDICKKTFKYKANIRRHMSVVHLGFKPTPTECDICKKTFKSKVTLRQHKTAVHSGFTFECDICKKTFKYKANIRRHMSVVHLGFKPTPTECDICKKTFKSKVTLRQHKTAVHSGFTFECDICKKTFKYKANIRRHMSVVHLGFKPTPTECDICKKTFKSKVTLRQHKTAVHSGFTFECDICKKTFKYKANIRRHMSVVHLGFKPTPTECDICKKTFKSKVTLRQHKTAVHSGFTFECDICKKTFKSKANIYRHMSAVHLGFKVVPCAPNKLQRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01386020;
90% Identity
iTF_01386020;
80% Identity
iTF_01386020;