Sfus009868.1
Basic Information
- Insect
- Sylvicola fuscatus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_026546915.1
- Location
- JANSTS010007539.1:4652-6650[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.46 6.4e+03 -4.2 3.4 56 92 122 157 43 163 0.61 2 2 3e-106 4.3e-102 341.1 32.8 1 299 184 469 184 470 0.93
Sequence Information
- Coding Sequence
- ATGTCGTCCAAAATGCGTTTCACCGAACCAAATAACAACGAAACGTCCAAGCTGGTGAAGGCACCGGCCAGTGATGAAAGTGACTGTTACAGTGATAGTAATTGCGAGGAATTTGACTTTGAGTCCAGTGATTTGGAGGAATTAGATAAAGAGACGATGATAAAGGCCGAGCCACGTTTATCTAATCATTTATCAGACAGCGATACCGAATTCCATGAGGCGTCCACGGCCAATTTCAACGGCTCCGCCAACAGTCCAATGCATTCCGAAGCTCAGCGTTCCTCAACACCGTTTTCCGAGAACGGTGTCTCTCAAGTACTTGGTTCTGATCTCTGTGAGACAGTTAACAGCAGCCTAATTGCGAATACCGCGACGACAAGATCGTCTATCGGCAACACCAGTGACTTGGTGTCGCAAGAAAGTGAAAACGACGAGACTGACGACACGCACAAGCACGCCAAGCACAATTCCCAAGATTATGTGTACGCCGATGATTATGACGAAGAGGACAAGGCGTTTGTCAATTTGTTAGGACGTGCTAACGAAATTGCGGAAGCTCGACTGGCGGCTAGGAGGCAGGCTCGCGCCGAAGCTCGAGAGATCCGCATGCGTGAGCTGGAGCGTCAACAAAGGGAGCAGGAACAGAATGCCGATAGAGCGTTCGACATGCATGGTACAGCTGGCGTTGATCCGGTGCGCTCCCGTCTGACCATTACATCCGTTACGAATTCCGTACGTGCCAATTCGATGTCGTCGCGACGCAGCAGCGAGGATTCGCTGGAGGAGGAGGGCCGCAGTTTACGGGATATACGGCTCGAATTGAAGGAGGTGGATGAACGCTATCGAAAGGCGATGATAGCGAACGCCCAGATGGACAACGAGCGTGGCTCTCAATCCTATCAAATTCAGCTGCTCAAAGACAAGCTGGAGGAGATGGAGGAGGCGCACGCCCAGCTGCAGCGCGAATTCAAAGAAAAGTGTCGTGACCATGATGCCATTAAACGTACCAATGAGAAATATGTGGAAGAATTGCAGTTAGTGAAAGGACAATTAAGCGAACGAGACACATTAATCGGCGAGCAGGGCCTTACAATTGTGATTGTTGAGAACGAGGACGGTTCCGATGCAAGACGTGCTCTAGTCAGTGTTGAGAATGCACAATTGCTCGATACGGTGCAAGGATCATTAGACGTAAGACTTAAGCGATTCGCCGAGGATAAGGCACAACTCCAGAACGAGGTTCATCAGCTGCAAGAGCAATTGTCACAAGTTAAAACTCAGGGACGTCGTTCGAGTGCTCTAAACGGGCCGTTGGGCGATGACGATTACGAAGATGCCCAAAGGGAAGCAAACAAATTAATTGCTGACTACAAATACAAACTGTCAAAGGCCGAGCAGGAGATCGCCAGTCTGCAGGCGAGCTTAGCCCGATCGGAGACGCAAGTTATTCGCTACAAGAGTACAGCTGAAGCGGCAGAAAAGGCCGAAGCGGATCTTAAAGTTGAACGAAGAAAACTGCAGCGTGAGCCGTTGATTATTGAACTGTGGGACGAATGTCACTGCCAATAA
- Protein Sequence
- MSSKMRFTEPNNNETSKLVKAPASDESDCYSDSNCEEFDFESSDLEELDKETMIKAEPRLSNHLSDSDTEFHEASTANFNGSANSPMHSEAQRSSTPFSENGVSQVLGSDLCETVNSSLIANTATTRSSIGNTSDLVSQESENDETDDTHKHAKHNSQDYVYADDYDEEDKAFVNLLGRANEIAEARLAARRQARAEAREIRMRELERQQREQEQNADRAFDMHGTAGVDPVRSRLTITSVTNSVRANSMSSRRSSEDSLEEEGRSLRDIRLELKEVDERYRKAMIANAQMDNERGSQSYQIQLLKDKLEEMEEAHAQLQREFKEKCRDHDAIKRTNEKYVEELQLVKGQLSERDTLIGEQGLTIVIVENEDGSDARRALVSVENAQLLDTVQGSLDVRLKRFAEDKAQLQNEVHQLQEQLSQVKTQGRRSSALNGPLGDDDYEDAQREANKLIADYKYKLSKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEADLKVERRKLQREPLIIELWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382079;
- 90% Identity
- -
- 80% Identity
- -