Scin012462.1
Basic Information
- Insect
- Sylvicola cinctus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963854165.1
- Location
- OY974084.1:33205725-33208670[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.18 1.3e+03 -1.9 0.7 43 75 45 75 27 93 0.59 2 4 0.31 2.4e+03 -2.7 0.2 60 95 140 175 121 180 0.59 3 4 1.6e-107 1.2e-103 346.3 33.9 1 299 202 487 202 488 0.93 4 4 0.18 1.3e+03 -1.9 3.5 219 244 515 540 491 562 0.43
Sequence Information
- Coding Sequence
- atgtcgTCCAAAATGCGTTTGACTGAACCTAATAACAACGAAATGccacaaataacaaaatcgCCAACACCAGCGAGCGACGAAAGCGATTGCTACAGTGACAGCAATTGTGAGGAATTTGATTTTGAGTCCAGTGATTTAgaggaattaaataaagagACGATGAATAAAGCCGTTGTCGCCGCCGCCAACACCTCACAATCACGGTTATCTACGTGTAATCATTTATCAGACAGCGATACCGAATACCATGAAGCGTCCACAGTCAATTTCGACGAACCTACTACAATAAGTCCTAGTCATTCCACAGAGCAGCAGCGTTCCTCGACACCGTTTTCAGACAGCGTCGGCGTACCAAAAACCGTAGGGTCGGATTTGTGTGAAACAGTCAATAGtagtttaattgtaaatacctgCACAAAGTCATCCATCGGGAATACAAGCGATTTGTTGTCCCAAGAGAGTGATAACGAATTGGAGGATCAGCATAATAAGCAATTACATAAACATAGTGCTAACAACTCGGAGGACTATGTGTATGCGGATGATTATGACGAAGAGGATAGGGCGTTTGTGAATTTGTTAGGACGTGCCAACGAAATTGCGGAAGCTCGATTGGCCGCACGAAGACAGGCTCGCGCTGAGGCTCGTGAAATTCGAATGCGCGAATTGGAACGCCAGCAAAGGGAACAGGAACAGAATGCTGATCGGGCGTTCGACATGCATGGTACCGTCAGTGTTGATCCGGTGCGCACCCGTCTTACAATATCATCTGTAACCAATTCAGTACGTGCCAATTCAATGTCGTCGAGACGCAGCAGTGAGGATTCCCTGGAGGAGGAGGGACGCAGTTTGCGGGATATTCGACATGAGCTGAAGgaAGTGGATGAACGCTTCCGAAAGGCAATGATAGCGAACGCCCAACTGGATAACGAGCGCGCATCTCAATCCTACCAAATTCAACTACTCAAAGATAAGCTGGAGGAAATGGAGGAAGCCCATGCACAATTGCAACGTGAATTCAAAGAAAAGTGTCGTGACCATGATGCCATTAAACGTACCAATGAAAAATACATAGAAGAATTGCAGTTAGTGAAAGGACAATTAACGGAGCGTGACACATTAATTGGCGAGCAAGGCCTCACCATTGTGATTGTGGAGAATGAGGATGGTTCCGATGCAAGACGTGCGCTAGTCAGTGTTGAAAATGCACAATTGCTTGATACTGTGCAAGGATCATTAGacGTTAGACTTAAACGTTTTGCTGAGGATAAGGTGCAACTCCAAAATGAGGTGCATCAACTACAGGAGCAGTTGTCACAAGTTAAAACTCAGGGACGTCGTTCTAGTGCATTAAATGGGCCATTAGGTGATGACGATTATGAGGATGCACAAAgggAAGCAAATAAACTGATTGCAGACTACAAATATAAGCTGCAAAAGGCCGAACAGGAAATCGCTAGTTTGCAAGCAAGTTTGGCTAGATCCGAGACGCAAGTTATTAGGTACAAGAGTACAGCTGAAGCGGCTGAAAAGGCGGAAGCTGATCTTAAAGTGGAACGACGAAAACTACAAAGAgagaaCCGCGAGGCAATGGAGCGAAACGAGGAGCTAGAAACCGCCAACAATCATTTACTCAAACGATTAGACAAGCTCAAAAATGCCAAAAGCGCATTGCTCAAGGATCTCTGA
- Protein Sequence
- MSSKMRLTEPNNNEMPQITKSPTPASDESDCYSDSNCEEFDFESSDLEELNKETMNKAVVAAANTSQSRLSTCNHLSDSDTEYHEASTVNFDEPTTISPSHSTEQQRSSTPFSDSVGVPKTVGSDLCETVNSSLIVNTCTKSSIGNTSDLLSQESDNELEDQHNKQLHKHSANNSEDYVYADDYDEEDRAFVNLLGRANEIAEARLAARRQARAEAREIRMRELERQQREQEQNADRAFDMHGTVSVDPVRTRLTISSVTNSVRANSMSSRRSSEDSLEEEGRSLRDIRHELKEVDERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEEAHAQLQREFKEKCRDHDAIKRTNEKYIEELQLVKGQLTERDTLIGEQGLTIVIVENEDGSDARRALVSVENAQLLDTVQGSLDVRLKRFAEDKVQLQNEVHQLQEQLSQVKTQGRRSSALNGPLGDDDYEDAQREANKLIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEADLKVERRKLQRENREAMERNEELETANNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01382914;
- 90% Identity
- -
- 80% Identity
- -